View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4431-Insertion-4 (Length: 465)
Name: NF4431-Insertion-4
Description: NF4431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4431-Insertion-4 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 125 - 465
Target Start/End: Complemental strand, 35029855 - 35029515
Alignment:
| Q |
125 |
taataatgtttgatgtaatacacttttttaatgttgcacgaataatataaacactaacgcatgttatgtgtgacagtgcatatcagaacgtaggatttac |
224 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35029855 |
taataatgttggatgtaatacactttttaaatgttgcacggataatataaacactaacgcatgttttgtgtgacagtgcatatcagaacgtaggatttac |
35029756 |
T |
|
| Q |
225 |
tatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgaggagggtaagatcatt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35029755 |
tatgggatacagttgtgaacgacagttgcatcgagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgatgagggtaagatcatt |
35029656 |
T |
|
| Q |
325 |
cttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattcttgaatatcaattctacccaac |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35029655 |
cttatacttgttatgttgcttggaagactcaagaaattcaacacggatgcgggtaatccatggaaacttctctgattcttgaatatcaattctacccaac |
35029556 |
T |
|
| Q |
425 |
atcagctccgatttcacacaaatgtgtgatctatgatcgat |
465 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35029555 |
atcaactctgatttcacacaaatgtgtgatctatgatcgat |
35029515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 211 - 402
Target Start/End: Complemental strand, 34970472 - 34970281
Alignment:
| Q |
211 |
aacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgagg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||| | |
|
|
| T |
34970472 |
aacgtaggatttactatgggatacagttgtgaacgacaattacatctagagataaattgtgaaaacaaatggattggatttgttgggaaatggagtgatg |
34970373 |
T |
|
| Q |
311 |
agggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattc |
402 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||||||| || || | |||||||| ||||| ||| || ||||||||||||||||||||| |
|
|
| T |
34970372 |
agggtaagatcattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattc |
34970281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 199 - 419
Target Start/End: Complemental strand, 34952629 - 34952406
Alignment:
| Q |
199 |
agtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaa |
298 |
Q |
| |
|
||||||||| ||||||||||||| | | |||||||||||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34952629 |
agtgcatatgggaacgtaggattttcaacaggatacagttgtgaactacagttgcatccagagacaaattgtgaaaacaaatggattggatttgttggaa |
34952530 |
T |
|
| Q |
299 |
aatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctg |
398 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||||||||||| ||||||| || || | |||||| | ||||| ||| || ||||||| |||| || |
|
|
| T |
34952529 |
aatggagtgatgagggtaagatcattctcatatttgttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattg |
34952430 |
T |
|
| Q |
399 |
attcttg---aatatcaattctac |
419 |
Q |
| |
|
|||| || |||||||||||||| |
|
|
| T |
34952429 |
attcatgatcaatatcaattctac |
34952406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 35030078 - 35029996
Alignment:
| Q |
8 |
tggatgtctatttcaaagttggtaagtcgaaattcattgctcttgaaattaaggttcatagatgtattacccagtcttaattt |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
35030078 |
tggatgtctatttcaaagttggtaagtcgaaattcactgctcttgaaactaaggttcatagatttattaccctgtcttaattt |
35029996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University