View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4431-Insertion-5 (Length: 463)
Name: NF4431-Insertion-5
Description: NF4431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4431-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 9 - 463
Target Start/End: Complemental strand, 38944301 - 38943847
Alignment:
| Q |
9 |
gtagttgctggaaatccttcagggagattagtggagagtttagatggatggaatacagcttctgttgttgcaaaattctcagggcctaaacatcgtttgg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38944301 |
gtagttgctggaaatccttcagggagattagtggagagtttagatggatggaatacagcttctgttgttgcaaaattctcagggcctaaacatcgtttgg |
38944202 |
T |
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| Q |
109 |
ctacatcagctactgtgaaggatgggaaagtgtacctaaaccatatggttggtattggataccctaaaaagaagcatgctattgttgaggctgtgtttta |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38944201 |
ctacatcagctactgtgaaggatgggaaagtgtacctaaaccatatggttggtattggataccctaaaaagaagcatgcaattgttgaggctgtgtttta |
38944102 |
T |
|
| Q |
209 |
attcatagcaatttccataaatctaaacagatttggttgaaatttggtgttccttcggttttttatgtttggtttcgtagcatttattgatactatctag |
308 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38944101 |
attcatagcactttccataaatctaaacagatttggttgaaatttggtgttcctttggttttttatgtttggtttcgtagcatttattgatactatctag |
38944002 |
T |
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| Q |
309 |
aaaagataaactctggtggaaatttggtgtaactgtaagttcataaatgctgtagtccttgtttttgtctctgtcggtataatgctcaatgtcaatggta |
408 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38944001 |
aaagaataaactctggtggaaatttggtgtaactgtaagttcataaatgctgtagtccttgtttttgtctctgtcggtataatgctcaatgtcaatggta |
38943902 |
T |
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| Q |
409 |
ggataacatgttttctttcatcgtgaaataatctactacctcccactcccttcga |
463 |
Q |
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| T |
38943901 |
ggataacatgttttctttcatcgtgaaataatctactacctcccactcccttcga |
38943847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 44172067 - 44171767
Alignment:
| Q |
10 |
tagttgctggaaatccttcagggagattagtggagagtttagatggatggaatacagcttctgttgttgcaaaattctcagggcctaaacatcgtttggc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
44172067 |
tagttgctggaaatccttcagggagattagtggagagtttagatggatggaatacagcttttgttgttgcaaaattctcagggcctaaacatcgtttgtc |
44171968 |
T |
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| Q |
110 |
tacatcagctactgtgaaggatgggaaagtgtacctaaaccatatggttggtattggataccctaaaaagaagcatgctattgttgaggctgtgttttaa |
209 |
Q |
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||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
44171967 |
tacatcaccaactgtgaaggatgggaaagtgtacctaaaccacatggttggaattggataccctaaaaagaagcatgctattgttgagac--tgttttaa |
44171870 |
T |
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| Q |
210 |
ttcatagcaatttccataaatctaaacagatttggttgaaatttggtgttccttcggttttttatgtttggtttcgtagcatttattgatactatctaga |
309 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
44171869 |
ttcatagcactttccataaatataaacagatttggttgaaatttggtgttccattggttttttatgtttggttttgtagcatttattgatactttctaga |
44171770 |
T |
|
| Q |
310 |
aaa |
312 |
Q |
| |
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||| |
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| T |
44171769 |
aaa |
44171767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 44192363 - 44192063
Alignment:
| Q |
10 |
tagttgctggaaatccttcagggagattagtggagagtttagatggatggaatacagcttctgttgttgcaaaattctcagggcctaaacatcgtttggc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
44192363 |
tagttgctggaaatccttcagggagattagtggagagtttagatggatggaatacagcttttgttgttgcaaaattctcagggcctaaacatcgtttgtc |
44192264 |
T |
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| Q |
110 |
tacatcagctactgtgaaggatgggaaagtgtacctaaaccatatggttggtattggataccctaaaaagaagcatgctattgttgaggctgtgttttaa |
209 |
Q |
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||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
44192263 |
tacatcaccaactgtgaaggatgggaaagtgtacctaaaccacatggttggaattggataccctaaaaagaagcatgctattgttgagac--tgttttaa |
44192166 |
T |
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| Q |
210 |
ttcatagcaatttccataaatctaaacagatttggttgaaatttggtgttccttcggttttttatgtttggtttcgtagcatttattgatactatctaga |
309 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
44192165 |
ttcatagcactttccataaatataaacagatttggttgaaatttggtgttccattggttttttatgtttggttttgtagcatttattgatactttctaga |
44192066 |
T |
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| Q |
310 |
aaa |
312 |
Q |
| |
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||| |
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| T |
44192065 |
aaa |
44192063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 44171725 - 44171688
Alignment:
| Q |
386 |
tataatgctcaatgtcaatggtaggataacatgttttc |
423 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
44171725 |
tataatgcttaatgtcaatggtaggataacatgttttc |
44171688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 44192021 - 44191984
Alignment:
| Q |
386 |
tataatgctcaatgtcaatggtaggataacatgttttc |
423 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
44192021 |
tataatgcttaatgtcaatggtaggataacatgttttc |
44191984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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