View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4431_high_1 (Length: 439)
Name: NF4431_high_1
Description: NF4431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4431_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 180 - 409
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
| Q |
180 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
279 |
Q |
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| T |
34899746 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
34899845 |
T |
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| Q |
280 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
379 |
Q |
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| T |
34899846 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
34899945 |
T |
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| Q |
380 |
gtttggtagtttcaactttcaagttgagat |
409 |
Q |
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| T |
34899946 |
gtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 52770602 - 52770471
Alignment:
| Q |
1 |
tactaaaactgagtaaatgtcaagaataagatagaa---aacttagctcaaaactagaaaatttattttcaataaaaattctctctatttaagtattgga |
97 |
Q |
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| T |
52770602 |
tactaaaactgagtaaatgtcaagaataagatagaagaaaacttagctcaaaactagaaaatttattttcaatcaaaattctctctattttagtattgga |
52770503 |
T |
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| Q |
98 |
aactttactagcaacttagtaattcactgact |
129 |
Q |
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| T |
52770502 |
aactttactagcaactttgtaattcactgact |
52770471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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