View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4431_high_2 (Length: 344)
Name: NF4431_high_2
Description: NF4431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4431_high_2 |
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| [»] scaffold0176 (2 HSPs) |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: scaffold0176 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 152 - 344
Target Start/End: Complemental strand, 31864 - 31672
Alignment:
| Q |
152 |
cataggaagattactttctgtcgtttgtgtttaaaaagagtggtgcatatgcaaccatgctaacaatatcactgcagaaaaagtataaaattgaaatatg |
251 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31864 |
cataggaaaattactttctgtcgtttgtgtttaaaaagagtggtgcatatgcaaccatgctaacaatatcactgcagaaaaagtataaaattgaaatatg |
31765 |
T |
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| Q |
252 |
attaaaacttagctcaaaataacacatactagttcataatattaaaccttataaatcaaatttcatgaaaagctatggctatatagctatata |
344 |
Q |
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| T |
31764 |
attaaaacttagctcaaaataacacatactagttcataatattaaaccttataaatcaaatttcatgaaaagctatggctatatagctatata |
31672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 32006 - 31919
Alignment:
| Q |
10 |
ataattctgataagagttaaaaacaattgcatctggtatccacctattttgataaaaaaatagattaaataatcatctctatcttttac |
98 |
Q |
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| T |
32006 |
ataattctgataagagttaaaaacaattgcatctggtatccacctattttgat-gaaaaatagattaaataatcatctctatcttttac |
31919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 152 - 344
Target Start/End: Complemental strand, 34165043 - 34164851
Alignment:
| Q |
152 |
cataggaagattactttctgtcgtttgtgtttaaaaagagtggtgcatatgcaaccatgctaacaatatcactgcagaaaaagtataaaattgaaatatg |
251 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34165043 |
cataggaaaattactttctgtcgtttgtgtttaaaaagagtggtgcatatgcaaccatgctaacaatatcactgcagaaaaagtataaaattgaaatatg |
34164944 |
T |
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| Q |
252 |
attaaaacttagctcaaaataacacatactagttcataatattaaaccttataaatcaaatttcatgaaaagctatggctatatagctatata |
344 |
Q |
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| T |
34164943 |
attaaaacttagctcaaaataacacatactagttcataatattaaaccttataaatcaaatttcatgaaaagctatggctatatagctatata |
34164851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 152 - 344
Target Start/End: Complemental strand, 34171540 - 34171348
Alignment:
| Q |
152 |
cataggaagattactttctgtcgtttgtgtttaaaaagagtggtgcatatgcaaccatgctaacaatatcactgcagaaaaagtataaaattgaaatatg |
251 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34171540 |
cataggaaaattactttctgtcgtttgtgtttaaaaagagtggtgcatatgcaaccatgctaacaatatcactgcagaaaaagtataaaattgaaatatg |
34171441 |
T |
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| Q |
252 |
attaaaacttagctcaaaataacacatactagttcataatattaaaccttataaatcaaatttcatgaaaagctatggctatatagctatata |
344 |
Q |
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| T |
34171440 |
attaaaacttagctcaaaataacacatactagttcataatattaaaccttataaatcaaatttcatgaaaagctatggctatatagctatata |
34171348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 152 - 344
Target Start/End: Complemental strand, 34215138 - 34214946
Alignment:
| Q |
152 |
cataggaagattactttctgtcgtttgtgtttaaaaagagtggtgcatatgcaaccatgctaacaatatcactgcagaaaaagtataaaattgaaatatg |
251 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34215138 |
cataggaaaattactttctgtcgtttgtgtttaaaaagagtggtgcatatgcaaccttgctaacaatatcactgcagaaaaagtataaaattgaaatatg |
34215039 |
T |
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| Q |
252 |
attaaaacttagctcaaaataacacatactagttcataatattaaaccttataaatcaaatttcatgaaaagctatggctatatagctatata |
344 |
Q |
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| T |
34215038 |
attaaaacttagctcaaaataacacatactagttcataaaattaaaccttataaatcaaatttcatgaaaagctatggctatatagctatata |
34214946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 34165185 - 34165098
Alignment:
| Q |
10 |
ataattctgataagagttaaaaacaattgcatctggtatccacctattttgataaaaaaatagattaaataatcatctctatcttttac |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34165185 |
ataattctgataagagttaaaaacaattgcatctggtatccacctattttgat-gaaaaatagattaaataatcatctctatcttttac |
34165098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 34171682 - 34171595
Alignment:
| Q |
10 |
ataattctgataagagttaaaaacaattgcatctggtatccacctattttgataaaaaaatagattaaataatcatctctatcttttac |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34171682 |
ataattctgataagagttaaaaacaattgcatctggtatccacctattttgat-gaaaaatagattaaataatcatctctatcttttac |
34171595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 34215279 - 34215192
Alignment:
| Q |
10 |
ataattctgataagagttaaaaacaattgcatctggtatccacctattttgataaaaaaatagattaaataatcatctctatcttttac |
98 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
34215279 |
ataattctgataagagttaaaaacaattgtatctggtatccacctattttgat-ggaaaatagattaaataatcatctttatcttttac |
34215192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 38725269 - 38725304
Alignment:
| Q |
10 |
ataattctgataagagttaaaaacaattgcatctgg |
45 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
38725269 |
ataattctgataagagttaaaaacaattgcgtctgg |
38725304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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