View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4431_high_4 (Length: 317)
Name: NF4431_high_4
Description: NF4431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4431_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 27949243 - 27949092
Alignment:
| Q |
41 |
catgaacctaagataaccattgttaatatatattctatcaacacccacaggatcaacaagcatgcttcatgcttcaacatgcaaatggacaacagttcca |
140 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27949243 |
catgtacctaagataaccattgttaatatatattctatcaacacccacaggatcaacaagcatgcttcatgcttcaacatgcaaatggacaacagttcca |
27949144 |
T |
|
| Q |
141 |
aactaagaaacaactattgctgcgtctctaatataatcaaccaatggagcat |
192 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27949143 |
aactaagaaacaaccattgctgcgtctctaatataatcaaccaatggagcat |
27949092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 11755858 - 11755978
Alignment:
| Q |
189 |
gcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtactattacaaaaggcatacagccttatgctcttttggttt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11755858 |
gcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctattacaaaaggcatacagccttatgctcttttggttt |
11755957 |
T |
|
| Q |
289 |
tcacctactttggtctctgct |
309 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11755958 |
tcacctactttggtctctgct |
11755978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 189 - 309
Target Start/End: Complemental strand, 12094077 - 12093957
Alignment:
| Q |
189 |
gcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtactattacaaaaggcatacagccttatgctcttttggttt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12094077 |
gcattttaaaaattccattgaaatcctaagaattgttgaacaaaaattgttatcttcagtgttattacaaaaggcatacagccttattctcttttggttt |
12093978 |
T |
|
| Q |
289 |
tcacctactttggtctctgct |
309 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12093977 |
tcacctactttggtctctgct |
12093957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University