View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4431_high_7 (Length: 304)
Name: NF4431_high_7
Description: NF4431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4431_high_7 |
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| [»] scaffold1445 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 26373432 - 26373141
Alignment:
| Q |
1 |
cagactgcaggcaaatacacctgcttttattcgtacgcctctctcaaatcttggtatcctcataatccttactttattagctaccaagaatacaaattgt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26373432 |
cagaatgcaggcaaatacacctgcttttattcgtacgcctctctcaa-tctcggtatcctcataatccttactttattagctaccaagaatacaaattgt |
26373334 |
T |
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| Q |
101 |
tgagctgatgttcagttcaccatgtcataaaaatagcttttaatgatgaatatagttacattatgactaaccaaatcattttgtggaataacaatttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26373333 |
tgagctgatgttcagttcaccatgtcataaaaatagcttttaatgatgaatataattacattatgactaaccaaatcattttgtggaataacaatttcag |
26373234 |
T |
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| Q |
201 |
ctaatgccaaaagggtgcacaagaaccattttcaacataccaagttaaactagtattcaccacaaacattatatgcattccgtctattttcat |
293 |
Q |
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| T |
26373233 |
ttaatgccaaaaggttgcacaagaaccattttcaacataccaagttaaactagtattcaccacaaacattatatgcattccgtctattttcat |
26373141 |
T |
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Target: scaffold1445 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1445
Description:
Target: scaffold1445; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 1796 - 1687
Alignment:
| Q |
130 |
aaaatagcttttaatgatgaatata-gttacattatgactaaccaaatcattttgtggaataacaatttcagctaatgccaaaagggtgcacaagaacca |
228 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||||||||||| | ||||||| ||||||||| |||||||||| | ||||||||| |
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| T |
1796 |
aaaatagctttta-tgatgaatataagttacatt-----taaccaaatcattaagcagaataacgatttcagctggtgccaaaaggctccacaagaacat |
1703 |
T |
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| Q |
229 |
ttttcaacataccaag |
244 |
Q |
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|||||||| ||||||| |
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| T |
1702 |
ttttcaacctaccaag |
1687 |
T |
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