View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4431_low_1 (Length: 350)

Name: NF4431_low_1
Description: NF4431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4431_low_1
NF4431_low_1
[»] chr7 (4 HSPs)
chr7 (82-332)||(44241366-44241616)
chr7 (82-221)||(27572389-27572537)
chr7 (204-280)||(43841175-43841249)
chr7 (292-332)||(44289214-44289254)
[»] chr8 (6 HSPs)
chr8 (82-284)||(12984079-12984280)
chr8 (292-332)||(20185635-20185675)
chr8 (292-332)||(20204702-20204742)
chr8 (282-332)||(45000099-45000150)
chr8 (292-332)||(16515206-16515246)
chr8 (294-334)||(32531329-32531369)
[»] chr3 (3 HSPs)
chr3 (133-296)||(44949441-44949604)
chr3 (240-286)||(47972711-47972757)
chr3 (84-131)||(7023553-7023600)
[»] chr1 (1 HSPs)
chr1 (142-332)||(11125150-11125336)
[»] chr4 (2 HSPs)
chr4 (195-320)||(17902208-17902332)
chr4 (226-286)||(2638865-2638925)
[»] chr2 (2 HSPs)
chr2 (233-280)||(13225463-13225510)
chr2 (255-332)||(34957869-34957947)
[»] chr6 (1 HSPs)
chr6 (283-333)||(10525225-10525275)
[»] chr5 (2 HSPs)
chr5 (296-332)||(4471742-4471778)
chr5 (292-332)||(15047209-15047249)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 82 - 332
Target Start/End: Complemental strand, 44241616 - 44241366
Alignment:
Q  82 atttctatttgggttctgttttctgttttattttctgttataggttagttactatggattcttacccttcatccctatctctttgtaacagaaggtctat 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44241616 atttctatttgggttctgttttctgttttattttctgttataggttagttactatggattcttacccttcatccctatctctttgtaacagaagctctat 44241517  T
Q  182 aaatataaccttcttcccttaggaaagcatctttggcatatatcttagttgtaattgcttttaaaaccagtgtaggagagcttgctctcttgttatttct 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44241516 aaatataaccttcttcccttaggaaagcatctttggcatatatcttagttgtaattgcttttaaaaccagtgtaggagagctagctctcttgttatttct 44241417  T
Q  282 tatttctttgtaaaattgttatttctttggaatccaattattgggttccta 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44241416 tatttctttgtaaaattgttatttctttggaatccaattattgggttccta 44241366  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 27572389 - 27572537
Alignment:
Q  82 atttctatttgggttctgttttctgttttatttt-ctgttataggttagttacta--------tggattcttacccttcatccctatctctttgtaacag 172  Q
    |||||||||||||||||||||||| || |||||| ||||||||||| |||| |||        ||||| ||||||| | |||||||||  ||||||||||    
T  27572389 atttctatttgggttctgttttctattgtatttttctgttataggtaagttgctaacttgctatggatccttacccattatccctatcattttgtaacag 27572488  T
Q  173 aaggtctataaatataaccttcttcccttaggaaagcatctttggcata 221  Q
    || ||||||||| | |||||||||| |||||||||| ||||||||||||    
T  27572489 aaagtctataaagacaaccttcttctcttaggaaaggatctttggcata 27572537  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 43841175 - 43841249
Alignment:
Q  204 gaaagcatctttggcatatatcttagttgtaattgcttttaaaaccagtgtaggagagcttgctctcttgttatttc 280  Q
    |||| ||||||||||||||  ||||||| | |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  43841175 gaaatcatctttggcatat--cttagttttgattggttttacaaccagtgtaggagagctagctctcttgttatttc 43841249  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 44289254 - 44289214
Alignment:
Q  292 taaaattgttatttctttggaatccaattattgggttccta 332  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  44289254 taaaattgttatttctttggaattcaattcttgggttccta 44289214  T

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Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 82 - 284
Target Start/End: Original strand, 12984079 - 12984280
Alignment:
Q  82 atttctatttgggttctgttttctgttttattttctgttataggttagttactatggattcttacccttcatccctatctctttgtaacagaaggtctat 181  Q
    |||||||| | |||| |||||||||||  |||||||||||||||||||||  ||||||| ||||||| | |||| | ||| |||||||||||||||||||    
T  12984079 atttctatctaggttttgttttctgttgcattttctgttataggttagttgatatggatccttacccattatccttttct-tttgtaacagaaggtctat 12984177  T
Q  182 aaatataaccttcttcccttaggaaagcatctttggcatatatcttagttgtaattgcttttaaaaccagtgtaggagagcttgctctcttgttatttct 281  Q
    ||||| |||||||||||||||| |||| ||||||| ||||||||||||||||||||| ||||| |||||||| |||||| |||||||  |||||||||||    
T  12984178 aaatacaaccttcttcccttagaaaaggatctttgacatatatcttagttgtaattggttttataaccagtgcaggagaacttgctcctttgttatttct 12984277  T
Q  282 tat 284  Q
    |||    
T  12984278 tat 12984280  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 20185675 - 20185635
Alignment:
Q  292 taaaattgttatttctttggaatccaattattgggttccta 332  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  20185675 taaaattgttatttctttggaattcaattcttgggttccta 20185635  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 20204742 - 20204702
Alignment:
Q  292 taaaattgttatttctttggaatccaattattgggttccta 332  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  20204742 taaaattgttatttctttggaattcaattcttgggttccta 20204702  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 45000150 - 45000099
Alignment:
Q  282 tatttctttgtaaaattgtta-tttctttggaatccaattattgggttccta 332  Q
    ||||||||  ||||||||||| |||||||||||||||||| |||||||||||    
T  45000150 tatttcttaataaaattgttaatttctttggaatccaattcttgggttccta 45000099  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 16515206 - 16515246
Alignment:
Q  292 taaaattgttatttctttggaatccaattattgggttccta 332  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  16515206 taaaattgttatttctttggaatccaatgcttggcttccta 16515246  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 32531329 - 32531369
Alignment:
Q  294 aaattgttatttctttggaatccaattattgggttcctatt 334  Q
    |||||||| ||||||||||||| |||| |||||||||||||    
T  32531329 aaattgttctttctttggaatcaaattcttgggttcctatt 32531369  T

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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 296
Target Start/End: Original strand, 44949441 - 44949604
Alignment:
Q  133 ctatggattcttacccttcatccctatctctttgtaacagaaggtctataaatataaccttcttcccttaggaaagcatctttggcatatatcttagttg 232  Q
    ||||||||  |||| | |||||| ||||||||||  ||| ||||||||||||||||||||||||| ||||| ||   |||||||||||||||||||||||    
T  44949441 ctatggatcattacacatcatccttatctctttggtacaaaaggtctataaatataaccttcttctcttagaaattgatctttggcatatatcttagttg 44949540  T
Q  233 taattgcttttaaaaccagtgtaggagagcttgctctcttgttatttcttatttctttgtaaaa 296  Q
    |||||| ||||| ||||| | ||||||||  |||||||||||| ||||||||||| | ||||||    
T  44949541 taattggttttataaccaatataggagagtctgctctcttgttttttcttatttcctagtaaaa 44949604  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 47972757 - 47972711
Alignment:
Q  240 ttttaaaaccagtgtaggagagcttgctctcttgttatttcttattt 286  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  47972757 ttttataaccagtgtaggagagcttgctctcttgttatttcctattt 47972711  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 7023600 - 7023553
Alignment:
Q  84 ttctatttgggttctgttttctgttttattttctgttataggttagtt 131  Q
    ||||||||||||||||||||||||| |||||||  |||| ||||||||    
T  7023600 ttctatttgggttctgttttctgttgtattttccattattggttagtt 7023553  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 332
Target Start/End: Complemental strand, 11125336 - 11125150
Alignment:
Q  142 cttacccttcatccctatctctttgtaacagaaggtctataaatataaccttcttcccttaggaaagcatctttggcatatatcttagttgtaattgctt 241  Q
    ||||||| | ||| || ||||||||||||| || |||||  ||||||||||||   |||||| ||||||||||||||||||  ||||||| |||||| ||    
T  11125336 cttacccattatcactttctctttgtaacataatgtcta--aatataaccttc---ccttagaaaagcatctttggcatat--cttagttataattggtt 11125244  T
Q  242 ttaaaaccagtgtaggagagcttgctctc--ttgttatttcttatttctttgt-aaaattgttatttctttggaatccaattattgggttccta 332  Q
    ||  ||| ||||||| |||||||||||||  |||||||||||||||||||| | |||| ||||||||| ||||||||||| | |||||||||||    
T  11125243 ttttaactagtgtagtagagcttgctctcttttgttatttcttatttctttatcaaaagtgttatttcattggaatccaactcttgggttccta 11125150  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 320
Target Start/End: Complemental strand, 17902332 - 17902208
Alignment:
Q  195 ttcccttaggaaagcatctttggcatatatcttagttgtaattgcttttaaaaccagtgtaggagagcttgctctcttgttatttcttatttctttgt-a 293  Q
    ||||||||| |||| |||||| |||||| |  ||||| | || | ||||| ||| ||||||||||| ||||||||||||||||||| ||||||||  | |    
T  17902332 ttcccttagaaaaggatctttagcatattt--tagttttgataggttttataactagtgtaggagaacttgctctcttgttatttcctatttcttaatca 17902235  T
Q  294 aaattgttatttctttggaatccaatt 320  Q
    ||| |||| ||||||||||||||||||    
T  17902234 aaagtgttctttctttggaatccaatt 17902208  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 2638925 - 2638865
Alignment:
Q  226 ttagttgtaattgcttttaaaaccagtgtaggagagcttgctctcttgttatttcttattt 286  Q
    |||||| | |||| ||||| ||||||| ||||||||||||||||| ||||||||| |||||    
T  2638925 ttagttttgattggttttacaaccagtctaggagagcttgctctcctgttatttcctattt 2638865  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 13225463 - 13225510
Alignment:
Q  233 taattgcttttaaaaccagtgtaggagagcttgctctcttgttatttc 280  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  13225463 taattggttttataaccagtgtaggagagcttgctctcttgttatttc 13225510  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 34957947 - 34957869
Alignment:
Q  255 aggagagcttgctctcttgttatttcttatttctttgt-aaaattgttatttctttggaatccaattattgggttccta 332  Q
    ||||||| || ||||| | ||||||| ||||||||| | |||| ||||  |||||||||||||||||||||||||||||    
T  34957947 aggagagatttctctcctattatttcctatttctttattaaaagtgttcgttctttggaatccaattattgggttccta 34957869  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 10525275 - 10525225
Alignment:
Q  283 atttctttgtaaaattgttatttctttggaatccaattattgggttcctat 333  Q
    |||||||  |||||||||||| |||||||||||||||| ||||||||||||    
T  10525275 atttcttaataaaattgttatatctttggaatccaattcttgggttcctat 10525225  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 4471742 - 4471778
Alignment:
Q  296 attgttatttctttggaatccaattattgggttccta 332  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  4471742 attgttgtttctttggaatccaattatttggttccta 4471778  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 15047209 - 15047249
Alignment:
Q  292 taaaattgttatttctttggaatccaattattgggttccta 332  Q
    ||||| |||| |||||||||||||||||| |||||||||||    
T  15047209 taaaagtgttctttctttggaatccaattcttgggttccta 15047249  T

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