View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432-Insertion-1 (Length: 1077)
Name: NF4432-Insertion-1
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 308 - 986
Target Start/End: Complemental strand, 7837187 - 7836502
Alignment:
| Q |
308 |
cagccgttagatctggatctatgataggtctttgagaagaaggtgcaagatgtggtggtggataaagattagtagtagtattatggttagggtgtgaatt |
407 |
Q |
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| T |
7837187 |
cagccgttagatctggatctatgataggtctttgagaagaaggtgcaagatgtggtggtggataaagattagtagtagtattatggttagggtgtgaatt |
7837088 |
T |
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| Q |
408 |
ttgaggtgggttattgaagactaatgtgtgaacttgaggtggtggtggtggagttggtgaagaagaagaagaatctctattgtaacctaaagttgtttgt |
507 |
Q |
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| T |
7837087 |
ttgaggtgggttattgaagactaatgtgtgaacttgaggtggtggtggtggagttggtgaagaagaagaagaatctctattgtaacctaaagttgtttgt |
7836988 |
T |
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| Q |
508 |
gacatctttgtttccattaacaaagacctaattaacctttgtgtgtttgagatctatattagaataatatatatatctctcttaaactataatctgcata |
607 |
Q |
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| T |
7836987 |
gacatctttgtttccattaacaaagacctaattaacctttgtgtgtttgagatctatattagaataatatatatatctctcttaaactataatctgcata |
7836888 |
T |
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| Q |
608 |
tttttatggtttaattatggttgtggatgctaaaccctaattcatccccatccaatactccaggaatat-agctactaaagaaagaagatatatatgatt |
706 |
Q |
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| T |
7836887 |
tttttgtggtttaattatggttgtggatgctaaaccctaattcatccccatccaatactccaggaatataagctactaaagaaagaagatatatatgatt |
7836788 |
T |
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| Q |
707 |
actagcagtagcaaagatagtaagatactattattctttaatgtgtgattattctgataaatgacaatcccaccaaccgaatttcactaatcaatcctat |
806 |
Q |
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| T |
7836787 |
actagcagtagcaaagatagtaagatactattattctttaatgtgtgattattctgataaatgataatcccaccaaccgaatttcactaatcaatcctat |
7836688 |
T |
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| Q |
807 |
tctcagaaatctaaggaagtgctttaactgtttatataggaccactaatgggaatattgttctaattttacnnnnnnngggaaataattttcggataaag |
906 |
Q |
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| T |
7836687 |
tctcagaaatctaaggaagtgctttaactgtttatataggaccactaatgggaatattgttctaattttttttttttgggaaaataattttcggataaag |
7836588 |
T |
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| Q |
907 |
gaggaaatagag-atatataggac--aaaatattagtggaaatct-atctaatctaagt-aaagtaaaa--gaataatactcacctc |
986 |
Q |
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| T |
7836587 |
gaggaaatagagaatatataggacaaaaaatattagtggaaatctaatctaat-taagtaaaagtaaaaagaaataatactcacctc |
7836502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 7837487 - 7837257
Alignment:
| Q |
8 |
cgttgttgttgctatgatgataattaggaacatgctgaaaatgttgttgaggaatactatgttgttgttggacatgttttcgatggaaattacggtgaca |
107 |
Q |
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| T |
7837487 |
cgttgttgttgctatgatgataattaggaacatgctgaacatgttgttgaggaatactatgttgttgttggacatgttttcgatggaaattacggtgaca |
7837388 |
T |
|
| Q |
108 |
atcacaagcagcacatttgaagtattgtggggtaccttcttcaccgcttggcatgaattcaccacatccatctaccacgtggcttcccatgcttgccgcg |
207 |
Q |
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| T |
7837387 |
atcacaagcagcacatttgaagtattgtggggtaccttcttcaccgcttggcatgaattcaccacatccatctaccacgtggcttcccatgcttgccgcg |
7837288 |
T |
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| Q |
208 |
tggtttctcagacattctcggtaacatattt |
238 |
Q |
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| T |
7837287 |
tggtttctcagacattctcggtaacatattt |
7837257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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