View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432-Insertion-10 (Length: 700)
Name: NF4432-Insertion-10
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 90 - 679
Target Start/End: Original strand, 8707569 - 8708159
Alignment:
| Q |
90 |
tgtgatgacatttaaatgtttgagggattaatttgacgatcaatttagggtcttaaagtttgcacaatgtgaatattgaaggtaaataaatttattttgt |
189 |
Q |
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| T |
8707569 |
tgtgatgacatttaaatgtttgtttgattaatttggcgatcaatttagggtcttataatttgcacaatgtgaatattgaaggtaaataaatttattttgt |
8707668 |
T |
|
| Q |
190 |
t-gatgaatttaaaatgtctctatcaagacgaactttgtttcattgtaagttgcatcattgtaaggccatgtgatttctatctagtgtatctcatcatca |
288 |
Q |
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| T |
8707669 |
ttgatgaatttagaatgtctctttcaagacgaactttgtttcactgtaagttgcatcattgtaaggccatgtgatttctatctagtgtatctcatcatca |
8707768 |
T |
|
| Q |
289 |
tgatgaaattcttgacacagaaaaagtccagaagtagtgttattggttttgaagaagggggagatgaagaagtttccttggtgccagagtagtgattctt |
388 |
Q |
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| T |
8707769 |
tgatgaaattcttgacacagaaaaagtccagaagcagtgttattggttttgaagaagggggagatgaagaagtttccttggtgccagagtagtgattctt |
8707868 |
T |
|
| Q |
389 |
ggaatcttataaagtattctaactgtcagaaagtgtttttcagcatgaattgcattaaagaaagagtatatgattatctgtgacatcattatctgctgtg |
488 |
Q |
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| T |
8707869 |
ggaatcttataaagtattctaactgtcggaaagtgtttttcagcatgaattgcattaaagaaagagtatatgattatctgtgacatcattatctgctgtg |
8707968 |
T |
|
| Q |
489 |
agtatatgattaattttttgcttgattttgttctaattgtacagggtcatttgttgtcaacattgtatatgatagacaaaagtatttggaaaattctgaa |
588 |
Q |
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| T |
8707969 |
agtatatgattaattttttgcttgattttgttctaattgtacagagtcatttgttatcaacattgtatatgatagacaaaagtatttggaaaattctgaa |
8708068 |
T |
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| Q |
589 |
gcttgaatatttgaaaagtgtgctatgatttgccttattggttctggctttgatttcacagtttttctactgcttgcgcgtcttctggtag |
679 |
Q |
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| T |
8708069 |
gcttgaatatttgaaaagtgtgttatgatttgccttactggttctggctttgatttcacacttgttctactgcttgtgcgtcttctggtag |
8708159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 152 - 298
Target Start/End: Original strand, 8692637 - 8692786
Alignment:
| Q |
152 |
cacaatgtgaatattgaaggtaaataaattt-attttgtt-gatgaatttaaaatgtctctatcaagacgaactttgtttcattgtaagttgcatcattg |
249 |
Q |
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| T |
8692637 |
cacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattagaacaattctatcaagatgaagtttctttcattgtaagttgcatcattg |
8692736 |
T |
|
| Q |
250 |
taaggccatgtgatttctatct-agtgtatctcatcatcatgatgaaatt |
298 |
Q |
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| T |
8692737 |
taaggccatgtgattttcatctgtgtgtatttgatcatcatgatgaaatt |
8692786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 466 - 629
Target Start/End: Original strand, 8699402 - 8699563
Alignment:
| Q |
466 |
ctgtgacatcattatctgctgtgagtatatgattaattttttgc-ttgattttgttctaattgtacagggtcatttgttgtcaacattgtatatgataga |
564 |
Q |
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| T |
8699402 |
ctgtgacatcattatctgttgtgagtacatggttaattttttcctttggttttgttctcagtgtacagggtggtttgttatcaacattgtata--ata-a |
8699498 |
T |
|
| Q |
565 |
caaaagtatttggaaaattctgaagcttgaatatttgaaaagtgtgctatgatttgccttattgg |
629 |
Q |
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| T |
8699499 |
tagaatattttggaaaattctgaaacttgaatatttgaaaagtgtgcattgatctgccttattgg |
8699563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 8699280 - 8699359
Alignment:
| Q |
19 |
agcttataaaagatacaatgtagtagtcaaatttgtccttctat---atcactatagttttctgtaaagacagttgtgat |
95 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||| || | |||| |||||||||||||||||| ||||||| |
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| T |
8699280 |
agcttataaaagatacaaagtagtagccaaatttgtccttccatctcaccactttagttttctgtaaagacaattgtgat |
8699359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 466 - 557
Target Start/End: Complemental strand, 14383144 - 14383054
Alignment:
| Q |
466 |
ctgtgacatcattatctgctgtgagtatatgattaattttttgcttgattttgttctaattgtacagggtcatttgttgtcaacattgtata |
557 |
Q |
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| T |
14383144 |
ctgtgacatcattatctgttgtgagtacatggttaatttttttcttggttttgttctcagtgtacatggt-ggttgttatcaacattgtata |
14383054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 333 - 447
Target Start/End: Original strand, 2846514 - 2846628
Alignment:
| Q |
333 |
ggttttgaagaagggggagatgaagaagtttccttggtgccagagtagtgattcttggaatcttataaagtattctaactgtcagaaagtgtttttcagc |
432 |
Q |
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||||||||||||| | || |||||||| || |||||| |||||||||||||||| |||| | ||||||| | ||||| ||||||| ||||||| || |
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| T |
2846514 |
ggttttgaagaagtgtaggaggaagaagtgtcattggtgtcagagtagtgattctttgaatttgataaagtgtaacaactgccagaaagagtttttctgc |
2846613 |
T |
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| Q |
433 |
atgaattgcattaaa |
447 |
Q |
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||| ||||||||||| |
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| T |
2846614 |
atggattgcattaaa |
2846628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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