View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432-Insertion-12 (Length: 489)
Name: NF4432-Insertion-12
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432-Insertion-12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 489
Target Start/End: Original strand, 7332473 - 7332953
Alignment:
| Q |
8 |
aaatcaaggtcaaagagtagaagtcttctggatcaatttacatttgaagaggaggatagatctccagctagagaggtccatacatctgtagcagctcaaa |
107 |
Q |
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| T |
7332473 |
aaatcaaggtcaaagagtagaagtcttctggatcaatttacatttgaagaggaggatagatctgtagctagagaggtccacacatctgtagcagctcaaa |
7332572 |
T |
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| Q |
108 |
accaaatgcagaataagccttctccaagttttgatcaattgatgaataagagcatggccgtggacctattttctggcatggaagagagatggtcgatata |
207 |
Q |
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| T |
7332573 |
accaaatgcagaaaaagccttcaataagttttgatcaattgatgaataagagcgtggcaatggacctattttctggcatggaagagagatggtcgatata |
7332672 |
T |
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| Q |
208 |
ccttctacttccactgcatgcttagcctgaaggatttgagtcagcttcagttaataacagaaactgaaaagcaatggagaacagtagctggagaaataat |
307 |
Q |
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| T |
7332673 |
ccttctacttccactgcatgcttt-cctgaaggatttgcgtcagcttcagttaataacagaaactgaaaagcaatggaaaacagtagctggagaaataat |
7332771 |
T |
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| Q |
308 |
taaagatgcagagatccacattagcaactacttatggtggtttgaaacttttggcatagtgaagaaatccaagatggacattccatttattacaaatcat |
407 |
Q |
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| T |
7332772 |
tgaagatgcagagatctacattagcaactacttatggtggtttgaaactttcggcatactgaagaaatccaagatgaacattccattaattacaaatcat |
7332871 |
T |
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| Q |
408 |
ttcagaaaggagatgaagctcattgtaactgggtttgaggatcttctcaagtacaacttaactttcattgacagagctgcag |
489 |
Q |
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| T |
7332872 |
ttcagaaaggatatgaagctcattgtaactgggtttgaggatcttctcaagtacaacttaactttcattgacagagctgcag |
7332953 |
T |
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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 359
Target Start/End: Original strand, 6820294 - 6820484
Alignment:
| Q |
168 |
tggacctattttctggcatggaagagagatggtcgatataccttctacttccactgcatgcttagcctgaaggatttgagtcagcttcagttaataacag |
267 |
Q |
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|||| |||||||| |||||||||||||| ||| || || || | |||||| ||||||||| ||| ||||| |||||||| ||||| ||| ||| | |
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| T |
6820294 |
tggagctattttcgagcatggaagagagaccgtctatctatctcatgcttccattgcatgcttt-cctcaaggacttgagtcatcttcaattagaaactg |
6820392 |
T |
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| Q |
268 |
aaactgaaaagcaatggagaacagtagctggagaaataattaaagatgcagagatccacattagcaactacttatggtggtttgaaactttt |
359 |
Q |
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| T |
6820393 |
aaacagaaaattgctggagaacagtagcagaagaaataattaaagatgctgagatccacatttgaaactacttaaggtggtttgatactttt |
6820484 |
T |
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