View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4432-Insertion-2 (Length: 1032)
Name: NF4432-Insertion-2
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432-Insertion-2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 354 - 846
Target Start/End: Complemental strand, 32650438 - 32649934
Alignment:
| Q |
354 |
catgtgcccccatttcatgcttttgttgattatatctaggatttaaaatgtaagtggattacatggcaactttacatttcatatcatttattttgaactg |
453 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32650438 |
catgtgcccccatttcatgcttttgttgattatatctaggatttaaaatgtaagtggattacatggcaactttacatttcatatcatttattttgaactg |
32650339 |
T |
|
| Q |
454 |
tgata----acag--agt-------aaattcataaccattctaactacataacagagtaaattgtctgcaactcataagacaaccttnnnnnnnnggtca |
540 |
Q |
| |
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||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32650338 |
tgatatttcatagccagttcataaaaaattcataaccattctaactacataacagagtaaattgtctgcaactcataagacaaccttaaaaaaa-ggtca |
32650240 |
T |
|
| Q |
541 |
tatatgcagttcagcacatagaaatgcaaaatctatgacaaaaacacactccccattaacttttaaagtaatagcaggttccaaatgaaatagggacgat |
640 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32650239 |
tatatgcagttcaacacatagaaatgcaaaatatatgacaaaaacacactccccattaacttt-aaagtaatagcaggttccaaatgaaatagggacgat |
32650141 |
T |
|
| Q |
641 |
ccacatgttccaaattgcagtgtatatggatagaagctttcaaaagcttacaagttattttcctgcattttggttt-gtgccattgatgtactccatttc |
739 |
Q |
| |
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| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
32650140 |
ctacatgttccaaattgcagtctatatggatagaagctttcaaaagcttacatgttattttcctgcattttggttttgtgcgattgatgtactccatttc |
32650041 |
T |
|
| Q |
740 |
agaattttaccattcaatttttcatattcataatatgttttaattgcagtgtatccgattagaagcgttggaaagcttacaagttattttcctagataat |
839 |
Q |
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| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||| |||||| |
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| T |
32650040 |
ataattttaccattcaatttttcatattcataatattttttaattgcaatgtatccgattagaagcgatggaaaacttacaagttattttcctggataat |
32649941 |
T |
|
| Q |
840 |
tttgcag |
846 |
Q |
| |
|
||||||| |
|
|
| T |
32649940 |
tttgcag |
32649934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 39 - 357
Target Start/End: Complemental strand, 32650859 - 32650544
Alignment:
| Q |
39 |
taatcaactctttatttctcaaaccaaaaatctttcattcgttcatctctctccaccgctctcatctgcttcttcgatggatctcagcatctcaattcgt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32650859 |
taatcaactctttatttctcaaaccaaaaatctttcattcgttcatctctctccaccgctctcatctgcttcttcgatcgatctcagcatctcaattcgt |
32650760 |
T |
|
| Q |
139 |
ttactctttcctttcatttatttgcattatcgccgtgataaatggatcagaattgttctgatatttacacaaatataaacaaacccctcatgaaatgatt |
238 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32650759 |
ttactctttcctttcatttattttcattatggccgtgatgaatggatcagaattgttctgatatttacacaaatataaacaaacccctcatgaaatgatt |
32650660 |
T |
|
| Q |
239 |
tcagtacgttaatcattatgattgttcacgttctggtactttttcctttggattccacctctctctaatattaattttcttgt-gtccaattttgttttg |
337 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
32650659 |
tca----gttaatcattatgattgttcacgttctggtactttttcctttggattccacctctctctaatattaattttcatgtggtccaattttgttttg |
32650564 |
T |
|
| Q |
338 |
ggtttcattgctacgtcatg |
357 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
32650563 |
ggtttcattgctacgtcatg |
32650544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 844 - 957
Target Start/End: Complemental strand, 32649868 - 32649754
Alignment:
| Q |
844 |
cagtttgactatatggaaaggagatgagtttagttttgaggaatttcgagcggcgactttgtatttg-ttttgggtgttgatgcatttagcgcttttccg |
942 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
32649868 |
cagtttgactatatggaaaggagatgagtttagttttgaggaatttcgagcggcgactttgtatttgtttttgagtgttgatgcatttagcgcttttccg |
32649769 |
T |
|
| Q |
943 |
tttcagttgtacgta |
957 |
Q |
| |
|
||||||||||||||| |
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|
| T |
32649768 |
tttcagttgtacgta |
32649754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 1e-50; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 689 - 846
Target Start/End: Complemental strand, 2388533 - 2388376
Alignment:
| Q |
689 |
tacaagttattttcctgcattttggttt-gtgccattgatgtactccatttcagaattttaccattcaatttttcatattcataatatgttttaattgca |
787 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||| | |
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| T |
2388533 |
tacaagttattttcctgcattttgattttgtgcgattgatgtactccgtttcataattttaccattcaatttttcatattcataatatggtttagttg-a |
2388435 |
T |
|
| Q |
788 |
gtgtatccgattagaagcgttggaaagcttacaagttattttcctagataattttgcag |
846 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2388434 |
gtgtatccggttagaagctttggaaagcttacaagttattttcctgcataattttgcag |
2388376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 847 - 950
Target Start/End: Complemental strand, 2388318 - 2388215
Alignment:
| Q |
847 |
tttgactatatggaaaggagatgagtttagttttgaggaatttcgagcggcgactttgtatttgtttt-gggtgttgatgcatttagcgcttttccgttt |
945 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| |||||| ||||| | ||| ||| |||||||| | ||| |||||||||||||| ||||| |||| |
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|
| T |
2388318 |
tttgactacatgggaaggagatgagtttagttttgatgaatttggagcgacaactgtgtttttgttttcgagtgctgatgcatttagcg-ttttctgttt |
2388220 |
T |
|
| Q |
946 |
cagtt |
950 |
Q |
| |
|
||||| |
|
|
| T |
2388219 |
cagtt |
2388215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 33854198 - 33854228
Alignment:
| Q |
7 |
acccatatccacacaatcgaagaaggagaca |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33854198 |
acccatatccacacaatcgaagaaggagaca |
33854228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 33854332 - 33854374
Alignment:
| Q |
91 |
ccaccgctctcatctgcttcttcgatggatctcagcatctcaa |
133 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||||||||||| |
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|
| T |
33854332 |
ccaccactctcatctgcttcttcaatcgatctcagcatctcaa |
33854374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 671 - 708
Target Start/End: Complemental strand, 2388423 - 2388386
Alignment:
| Q |
671 |
tagaagctttcaaaagcttacaagttattttcctgcat |
708 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
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|
| T |
2388423 |
tagaagctttggaaagcttacaagttattttcctgcat |
2388386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 844 - 940
Target Start/End: Original strand, 24762290 - 24762388
Alignment:
| Q |
844 |
cagtttgactatatggaaaggagatgagtttagttttgaggaatttcgagcggcgactttg-tatttgtttt-gggtgttgatgcatttagcgcttttc |
940 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || | |||||||| | ||| |||||||||||||||||||| |
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| T |
24762290 |
cagtttgactatatgggaaggagatgagtttagttttgaggaatttggagcggcgactgtgttttttgttttcgagtgctgatgcatttagcgcttttc |
24762388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 844 - 940
Target Start/End: Original strand, 52129725 - 52129823
Alignment:
| Q |
844 |
cagtttgactatatggaaaggagatgagtttagttttgaggaatttcgagcggcgactttg-tatttgtttt-gggtgttgatgcatttagcgcttttc |
940 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || | |||||||| | ||| |||||||||||||||||||| |
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|
| T |
52129725 |
cagtttgactatatgggaaggagatgagtttagttttgaggaatttggagcggcgactgtgttttttgttttcgagtgctgatgcatttagcgcttttc |
52129823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 716 - 780
Target Start/End: Complemental strand, 12634998 - 12634934
Alignment:
| Q |
716 |
tgtgccattgatgtactccatttcagaattttaccattcaatttttcatattcataatatgtttt |
780 |
Q |
| |
|
||||| |||||| ||||| |||| | |||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
12634998 |
tgtgctattgatttactctattttataattttaccattcaatatttgatattcataatatatttt |
12634934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 5080091 - 5080153
Alignment:
| Q |
91 |
ccaccgctctcatctgcttcttcgatggatctca-gcatctcaattcgtttactctttccttt |
152 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||| | |||||||||| | ||||||||||||| |
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|
| T |
5080091 |
ccactgctctcatctgcttcttctatcgatctcatgtatctcaattcctatactctttccttt |
5080153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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