View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4432-Insertion-3 (Length: 1029)

Name: NF4432-Insertion-3
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4432-Insertion-3
NF4432-Insertion-3
[»] chr3 (45 HSPs)
chr3 (8-1022)||(988807-989817)
chr3 (564-676)||(803191-803302)
chr3 (409-675)||(956190-956458)
chr3 (554-676)||(3754557-3754678)
chr3 (624-673)||(1931130-1931179)
chr3 (595-676)||(4142107-4142187)
chr3 (555-659)||(1007419-1007522)
chr3 (142-194)||(1891515-1891567)
chr3 (224-271)||(997197-997244)
chr3 (224-271)||(1013587-1013634)
chr3 (555-658)||(1022447-1022549)
chr3 (592-663)||(2678385-2678455)
chr3 (570-664)||(997549-997642)
chr3 (570-664)||(1013939-1014032)
chr3 (595-664)||(4157929-4157997)
chr3 (564-675)||(2459242-2459352)
chr3 (595-674)||(2696707-2696785)
chr3 (826-872)||(2686101-2686147)
chr3 (624-673)||(2476660-2476709)
chr3 (826-870)||(1438225-1438269)
chr3 (829-869)||(1936766-1936806)
chr3 (597-661)||(2442039-2442102)
chr3 (597-673)||(2644338-2644413)
chr3 (597-673)||(2659128-2659203)
chr3 (597-657)||(7334231-7334290)
chr3 (820-872)||(12133304-12133356)
chr3 (822-869)||(802977-803024)
chr3 (595-662)||(968669-968735)
chr3 (564-667)||(1940561-1940663)
chr3 (140-198)||(955921-955979)
chr3 (304-382)||(968387-968465)
chr3 (142-188)||(1004028-1004074)
chr3 (142-188)||(1022025-1022071)
chr3 (821-883)||(1022688-1022750)
chr3 (304-346)||(1937294-1937336)
chr3 (570-668)||(7432035-7432132)
chr3 (629-667)||(13479609-13479647)
chr3 (839-872)||(763338-763371)
chr3 (598-651)||(768327-768379)
chr3 (821-882)||(1007660-1007721)
chr3 (304-345)||(1931469-1931510)
chr3 (564-665)||(1936964-1937064)
chr3 (146-191)||(1941027-1941072)
chr3 (146-199)||(2697190-2697243)
chr3 (142-191)||(2931466-2931515)
[»] chr5 (11 HSPs)
chr5 (589-676)||(11081805-11081891)
chr5 (586-658)||(23766853-23766924)
chr5 (586-658)||(23816701-23816772)
chr5 (592-663)||(1427679-1427749)
chr5 (143-187)||(23754491-23754535)
chr5 (143-187)||(23774525-23774569)
chr5 (143-187)||(23819946-23819990)
chr5 (143-187)||(23861478-23861522)
chr5 (399-449)||(23769851-23769901)
chr5 (399-449)||(23819699-23819749)
chr5 (459-516)||(41973606-41973663)
[»] chr4 (5 HSPs)
chr4 (567-675)||(20019746-20019853)
chr4 (408-667)||(22672109-22672358)
chr4 (629-673)||(20016161-20016205)
chr4 (224-271)||(22672519-22672566)
chr4 (824-862)||(22671932-22671970)
[»] chr8 (3 HSPs)
chr8 (497-665)||(19727781-19727948)
chr8 (142-194)||(31144847-31144899)
chr8 (142-191)||(19727414-19727463)
[»] scaffold1004 (1 HSPs)
scaffold1004 (826-872)||(2374-2420)
[»] scaffold0760 (1 HSPs)
scaffold0760 (826-872)||(4869-4915)
[»] chr7 (2 HSPs)
chr7 (821-882)||(1077942-1078003)
chr7 (597-664)||(1078145-1078211)
[»] chr2 (1 HSPs)
chr2 (825-873)||(36577621-36577669)
[»] chr1 (1 HSPs)
chr1 (624-666)||(51381438-51381480)
[»] scaffold0200 (1 HSPs)
scaffold0200 (459-516)||(914-971)
[»] scaffold0044 (1 HSPs)
scaffold0044 (624-673)||(89169-89218)
[»] chr6 (1 HSPs)
chr6 (624-661)||(370773-370810)


Alignment Details
Target: chr3 (Bit Score: 858; Significance: 0; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 858; E-Value: 0
Query Start/End: Original strand, 8 - 1022
Target Start/End: Original strand, 988807 - 989817
Alignment:
Q  8 ttacccactagacaccatcaccgctaccaacatcgctcaatcctatttgcctttcagccattctgcttacttcgttggctcgtgtaatggcatcctctgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  988807 ttacccactagacaccatcaccgctaccaacatcgctcaatcctatttgcctttcagccattctgcttacttccttggctcgtgtgatggcatcctctgt 988906  T
Q  108 cttgctgctgatgatgattcaaactccattattgttcgattgtggaacccttccattagaaaagataaggaattgccccctcttcaagagccgaaaaaac 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  988907 cttgctgctgctgatgattcaaactccattattgttcgattgtggaacccttccattagaaaagataaggaattgccccttcttcaagagccaaaaaaac 989006  T
Q  208 aaaggcaagttatgaggatgtatggcttcggatatgatcctgttggtgataattacaaggttgtagtctttttacgtttaattgattctaatattagtaa 307  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989007 aaaagcacgttatgaggatgtatggcttcggatatgatcctgttggtgataattacaaggttgtagtctttttacgtttaattgattctaatattagtaa 989106  T
Q  308 ttttgttgacaaatataaagtgaaggttcatactttgggtactagttcttgggaaaacatttcgaatttccctttggttttccctctgaaaaaattggga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989107 ttttgttgacaaatataaagtgaaggttcatactttgggtactagttcttgggaaaacatttcgaatttccctttggttttccctctgaaaaaattggga 989206  T
Q  408 caatttgtgagtggcaccattaattggttggcttctaaagatcaattgaaaagtcaatgttttgttgctgctcttgatttagggagtgggtcttatcaag 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989207 caatttgtgagtggcaccattaattggttggcttctaaagatcaatcgagaagtcaatgttttgttgctgctcttgatttagggagtgggtcttatcaag 989306  T
Q  508 aggttttgcttcctgatgatggtgaggtacatgcatatcccttggttttgactgttttgagagattgcttgtgcattttttctagtgatgatgtttgggt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  989307 aggttttgcttcctgatgatggtgaggtacatgcatatcccttggttttgactgttttgagagattgcttgtgcattttttctggtgatgatgtttgggt 989406  T
Q  608 aatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacatgcaagatccttatagaccatcttatgacgttttcaaggcagt 707  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989407 aatgaaagagtacgg-aaataaagagtcttggactaaattgttcactatttcttacatgcaagatccttatagaccatcttatgacgttttcaaggcagt 989505  T
Q  708 atatatttttgaggattacctagtgcgacaagtgtctaataatagctttcggcaacagaaatttattttttacaaccgtagaaatgacacttcacggctt 807  Q
    ||||||||||||||||||||||||||||||||||||   | | |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  989506 atatatttttgaggattacctagtgcgacaagtgtc---tcaaagctttgggcaacagaaatttattttttacaaccgtagaaatgacacttctcggctt 989602  T
Q  808 tttgtgtctgtagacaccccagaagtctgcattgagagtttaatatcaccttgtttttaatgttaacttgtagatgc-gtgcaaatggaggacttgagca 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||   ||||||||||    
T  989603 tttgtgtctgtagacaccccagaagtctgcattgagagtttaatatcaccttgtttttaatgttaacttgtagatgcggtgc-aatg--agacttgagca 989699  T
Q  907 tgagatttacctagaa-ccataatgtaatttatgtctatggatattcattttgtatttgcctgattattgg-tacttcatgaatcattgttaatcaatgg 1004  Q
    ||||||||| |||||| |||||   |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  989700 tgagatttaactagaacccatatgttaatttatgtctat-gatattcattttgtatttgcctgattattggttacttcatgaatcattgttaatcaatgg 989798  T
Q  1005 ccg-ttgaatctgcaactg 1022  Q
    | | |||||||||||||||    
T  989799 cggtttgaatctgcaactg 989817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 803302 - 803191
Alignment:
Q  564 ttgagagattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttac 663  Q
    ||||| ||||||||||||||  ||||| |||||||||||||||| |||||||| || || ||||||||||||||||||||| ||||||||| | | | ||    
T  803302 ttgagggattgcttgtgcatgatttctggtgatgatgtttgggttatgaaagaatatgg-aaataaagagtcttggactaagttgttcactgtctgtcac 803204  T
Q  664 atgcaagatcctt 676  Q
    |||||| ||||||    
T  803203 atgcaatatcctt 803191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 409 - 675
Target Start/End: Original strand, 956190 - 956458
Alignment:
Q  409 aatttgtgagtggcaccattaattggttggcttctaaagatcaatt---gaaaagtcaatgttttgttgctgctcttgatttagggagtgggtcttatca 505  Q
    |||||||||||||||| || |||||||||| |||||||||| |      ||||| ||||| |||||||| | ||||||||||  |||  | |||||||||    
T  956190 aatttgtgagtggcacaatgaattggttggtttctaaagattatgctaggaaaaatcaatattttgttgtttctcttgatttgaggaacgagtcttatca 956289  T
Q  506 agaggttttgcttcctgatgatggtgaggtacatgcatatcccttggttttgactgttttgagagattgcttgtgcattttttctagtgatgatgtttgg 605  Q
    |||||||||| | || ||| |||| |||||  |||||  | | |||   |||| |||||| || ||||||||||||||  ||| | ||   |||||||||    
T  956290 agaggttttgttgcccgattatggcgaggtggatgcacgttctttgaacttgagtgttttcagggattgcttgtgcatgatttttggttgcgatgtttgg 956389  T
Q  606 gtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacatgcaagatcct 675  Q
     | ||||| || || |||||| ||||||||||||  ||||||||||| ||||||| ||||||||||||||    
T  956390 attatgaaggaatatggaaaa-aaagagtcttggcataaattgttcattatttctcacatgcaagatcct 956458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 554 - 676
Target Start/End: Original strand, 3754557 - 3754678
Alignment:
Q  554 tttgactgttttgagagattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcac 653  Q
    ||||| ||||||||| |||||||||||| |   |||| ||| |||||||||||| ||||| || || ||||| |||||||||||||||||||||||| ||    
T  3754557 tttgagtgttttgagggattgcttgtgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaa-taaagagtcttggactaaattgtttac 3754655  T
Q  654 tatttcttacatgcaagatcctt 676  Q
    |||| ||| ||||  ||||||||    
T  3754656 tattccttgcatgagagatcctt 3754678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 624 - 673
Target Start/End: Complemental strand, 1931179 - 1931130
Alignment:
Q  624 aaataaagagtcttggactaaattgttcactatttcttacatgcaagatc 673  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||    
T  1931179 aaataaagactcctggactaaattgttcactatttcttacatgcaagatc 1931130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 595 - 676
Target Start/End: Complemental strand, 4142187 - 4142107
Alignment:
Q  595 atgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacatgcaagatcctt 676  Q
    ||||||||||| | ||||| || || ||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  4142187 atgatgtttggcttatgaaggaatatggaaa-taaagagtcttggactaaattgttcactattccttacatgagagatcctt 4142107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 1007419 - 1007522
Alignment:
Q  555 ttgactgttttgagagattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcact 654  Q
    |||| |||||| || |||||||||  | | |||| | |||||||||||||||||||||| || || ||||| ||| ||||| ||||||||||||||||||    
T  1007419 ttgagtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaa-taacgagtcctggactaaattgttcact 1007517  T
Q  655 atttc 659  Q
    |||||    
T  1007518 atttc 1007522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 1891567 - 1891515
Alignment:
Q  142 ttcgattgtggaacccttccattagaaaagataaggaattgccccctcttcaa 194  Q
    |||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  1891567 ttcgattgtggaacccttccattagaaaatttaaggaattgccctctcttcaa 1891515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 997197 - 997244
Alignment:
Q  224 gatgtatggcttcggatatgatcctgttggtgataattacaaggttgt 271  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||    
T  997197 gatgtatggcttcggatatgaccctgttagtgataattacaaggttgt 997244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 1013587 - 1013634
Alignment:
Q  224 gatgtatggcttcggatatgatcctgttggtgataattacaaggttgt 271  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||    
T  1013587 gatgtatggcttcggatatgaccctgttagtgataattacaaggttgt 1013634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 555 - 658
Target Start/End: Original strand, 1022447 - 1022549
Alignment:
Q  555 ttgactgttttgagagattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcact 654  Q
    |||| |||||| || |||||||||  | | |||| | |||||||||||||||||||||| || || ||||| ||| ||||| ||||||||||||||||||    
T  1022447 ttgagtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaa-taacgagtcatggactaaattgttcact 1022545  T
Q  655 attt 658  Q
    ||||    
T  1022546 attt 1022549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 592 - 663
Target Start/End: Complemental strand, 2678455 - 2678385
Alignment:
Q  592 gtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttac 663  Q
    |||||||||||||||| |||||| | || |||||| |||||||| ||||||||||||||||||||| |||||    
T  2678455 gtgatgatgtttgggttatgaaacaatatggaaaa-aaagagtcatggactaaattgttcactattccttac 2678385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 570 - 664
Target Start/End: Original strand, 997549 - 997642
Alignment:
Q  570 gattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttaca 664  Q
    |||||||||  ||| |||||| |||||| ||||||||||||||| || || ||||| ||||||||||||||||||| | ||||| || |||||||    
T  997549 gattgcttgatcatgttttctggtgatgttgtttgggtaatgaaggaatatggaaa-taaagagtcttggactaaactattcaccatatcttaca 997642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 570 - 664
Target Start/End: Original strand, 1013939 - 1014032
Alignment:
Q  570 gattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttaca 664  Q
    |||||||||  ||| |||||| |||||| ||||||||||||||| || || ||||| ||||||||||||||||||| | ||||| || |||||||    
T  1013939 gattgcttgatcatgttttctggtgatgttgtttgggtaatgaaggaatatggaaa-taaagagtcttggactaaactattcaccatatcttaca 1014032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 595 - 664
Target Start/End: Complemental strand, 4157997 - 4157929
Alignment:
Q  595 atgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttaca 664  Q
    ||||||||||| | ||||| || || ||||| |||||||||||||||||||||||||||||| |||||||    
T  4157997 atgatgtttggcttatgaaggaatatggaaa-taaagagtcttggactaaattgttcactatctcttaca 4157929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 564 - 675
Target Start/End: Original strand, 2459242 - 2459352
Alignment:
Q  564 ttgagagattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttac 663  Q
    ||||| |||||||||| |||  ||||| || ||| ||||||| | ||||| || || ||||| ||||||||||||||| |||||||| ||  ||||||||    
T  2459242 ttgagtgattgcttgtccataatttctggtcatgttgtttggattatgaaggaatatggaaa-taaagagtcttggacaaaattgtttaccgtttcttac 2459340  T
Q  664 atgcaagatcct 675  Q
    |||| |||||||    
T  2459341 atgccagatcct 2459352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 595 - 674
Target Start/End: Complemental strand, 2696785 - 2696707
Alignment:
Q  595 atgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacatgcaagatcc 674  Q
    ||||||||||| | ||||| || || ||||| |||||||||||||| ||||||||||||| | ||||||||| |||||||    
T  2696785 atgatgtttggattatgaaggaatatggaaa-taaagagtcttggattaaattgttcactgtatcttacatggaagatcc 2696707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 826 - 872
Target Start/End: Complemental strand, 2686147 - 2686101
Alignment:
Q  826 ccagaagtctgcattgagagtttaatatcaccttgtttttaatgtta 872  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||    
T  2686147 ccagaagtctgcattgagagtttaatatggccttgttcttaatgtta 2686101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 624 - 673
Target Start/End: Original strand, 2476660 - 2476709
Alignment:
Q  624 aaataaagagtcttggactaaattgttcactatttcttacatgcaagatc 673  Q
    |||||||||||||||||||||||||| |||| || || ||||||||||||    
T  2476660 aaataaagagtcttggactaaattgtacactgttcctaacatgcaagatc 2476709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 826 - 870
Target Start/End: Original strand, 1438225 - 1438269
Alignment:
Q  826 ccagaagtctgcattgagagtttaatatcaccttgtttttaatgt 870  Q
    |||||||||| | |||||||||| |||||||||||||||||||||    
T  1438225 ccagaagtctacgttgagagtttgatatcaccttgtttttaatgt 1438269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 829 - 869
Target Start/End: Complemental strand, 1936806 - 1936766
Alignment:
Q  829 gaagtctgcattgagagtttaatatcaccttgtttttaatg 869  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  1936806 gaagtctgcgttgagagtttgatatcaccttgtttttaatg 1936766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 597 - 661
Target Start/End: Original strand, 2442039 - 2442102
Alignment:
Q  597 gatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttctt 661  Q
    ||||||||| | ||||| ||||| ||||| |||||| ||||||||||||||||||||| ||||||    
T  2442039 gatgtttggattatgaaggagtatggaaa-taaagattcttggactaaattgttcactctttctt 2442102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 597 - 673
Target Start/End: Complemental strand, 2644413 - 2644338
Alignment:
Q  597 gatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacatgcaagatc 673  Q
    ||||||||| | ||||| ||||| ||||| | ||||||||||||||||||||| ||||||| || || |||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaa-tcaagagtcttggactaaattgtacactattcctaacctgcaagatc 2644338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 597 - 673
Target Start/End: Complemental strand, 2659203 - 2659128
Alignment:
Q  597 gatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacatgcaagatc 673  Q
    ||||||||| | ||||| ||||| ||||| | ||||||||||||||||||||| ||||||| || || |||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaa-tcaagagtcttggactaaattgtacactattcctaacctgcaagatc 2659128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 597 - 657
Target Start/End: Complemental strand, 7334290 - 7334231
Alignment:
Q  597 gatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatt 657  Q
    ||||||||| | ||||| || |||||||| ||||||||||||||||||||||| |||||||    
T  7334290 gatgtttggatcatgaaggactacggaaa-taaagagtcttggactaaattgtacactatt 7334231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 820 - 872
Target Start/End: Original strand, 12133304 - 12133356
Alignment:
Q  820 gacaccccagaagtctgcattgagagtttaatatcaccttgtttttaatgtta 872  Q
    |||| |||||||||||||| | ||||||| ||||||||||||| |||||||||    
T  12133304 gacagcccagaagtctgcactaagagtttgatatcaccttgttcttaatgtta 12133356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 869
Target Start/End: Complemental strand, 803024 - 802977
Alignment:
Q  822 caccccagaagtctgcattgagagtttaatatcaccttgtttttaatg 869  Q
    |||||||||| ||||||||||||| || ||||||||||||| ||||||    
T  803024 caccccagaaatctgcattgagagcttgatatcaccttgttcttaatg 802977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 662
Target Start/End: Original strand, 968669 - 968735
Alignment:
Q  595 atgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttctta 662  Q
    ||||||||||||| ||||| ||  | ||||| ||||||||| ||||||||||| ||||||||||||||    
T  968669 atgatgtttgggttatgaaggaacatggaaa-taaagagtcatggactaaattattcactatttctta 968735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 667
Target Start/End: Complemental strand, 1940663 - 1940561
Alignment:
Q  564 ttgagagattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttac 663  Q
    ||||||||||  ||||||||| ||  | || ||||||||||||| ||||| ||  | ||||| | |||| || ||||||||||||||||||||||||| |    
T  1940663 ttgagagattctttgtgcattgttattggtcatgatgtttgggttatgaaggaacatggaaa-tcaagactcgtggactaaattgttcactatttcttgc 1940565  T
Q  664 atgc 667  Q
    ||||    
T  1940564 atgc 1940561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 955921 - 955979
Alignment:
Q  140 tgttcgattgtggaacccttccattagaaaagataaggaattgccccctcttcaagagc 198  Q
    |||||||||||| |||||||| |||||||||   ||||| |||||||||||| ||||||    
T  955921 tgttcgattgtgtaacccttctattagaaaattcaaggatttgccccctcttgaagagc 955979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 968387 - 968465
Alignment:
Q  304 gtaattttgttgacaaatataaagtgaaggttcatactttgggtactagttcttgggaaaacatttcgaatttcccttt 382  Q
    ||||||||||||| ||| | ||||||| ||||||||||||||| || | | ||||||||| ||||  ||| ||||||||    
T  968387 gtaattttgttgaaaaagacaaagtgatggttcatactttgggcaccaatgcttgggaaagcattcagaagttcccttt 968465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 1004028 - 1004074
Alignment:
Q  142 ttcgattgtggaacccttccattagaaaagataaggaattgccccct 188  Q
    ||||| |||||||||||||||||||||||   |||||||||||||||    
T  1004028 ttcgactgtggaacccttccattagaaaattaaaggaattgccccct 1004074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 1022025 - 1022071
Alignment:
Q  142 ttcgattgtggaacccttccattagaaaagataaggaattgccccct 188  Q
    ||||| |||||||||||||||||||||||   |||||||||||||||    
T  1022025 ttcgactgtggaacccttccattagaaaattaaaggaattgccccct 1022071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 821 - 883
Target Start/End: Original strand, 1022688 - 1022750
Alignment:
Q  821 acaccccagaagtctgcattgagagtttaatatcaccttgtttttaatgttaacttgtagatg 883  Q
    ||||||||||||| ||| |||||||||||||||| ||||||  |||||| ||  |||||||||    
T  1022688 acaccccagaagtgtgcgttgagagtttaatatcgccttgtccttaatgctagtttgtagatg 1022750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 1937336 - 1937294
Alignment:
Q  304 gtaattttgttgacaaatataaagtgaaggttcatactttggg 346  Q
    ||||||||||||||||  || ||||||||||||||||||||||    
T  1937336 gtaattttgttgacaaccatgaagtgaaggttcatactttggg 1937294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 570 - 668
Target Start/End: Complemental strand, 7432132 - 7432035
Alignment:
Q  570 gattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacatgca 668  Q
    ||||||||||||||  || || || |||||||||||   ||||| || || ||||| |||||| || ||||||||||||||||| ||||||||| ||||    
T  7432132 gattgcttgtgcatccttgctggtcatgatgtttggagtatgaaggaatatggaaa-taaagaatcgtggactaaattgttcaccatttcttacttgca 7432035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 629 - 667
Target Start/End: Original strand, 13479609 - 13479647
Alignment:
Q  629 aagagtcttggactaaattgttcactatttcttacatgc 667  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  13479609 aagagtcttggacaaaattgttcactatttctaacatgc 13479647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 872
Target Start/End: Complemental strand, 763371 - 763338
Alignment:
Q  839 ttgagagtttaatatcaccttgtttttaatgtta 872  Q
    |||||||||||||||||||||||| |||||||||    
T  763371 ttgagagtttaatatcaccttgttcttaatgtta 763338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 598 - 651
Target Start/End: Complemental strand, 768379 - 768327
Alignment:
Q  598 atgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttc 651  Q
    |||||||| | ||||| ||||||||||| | |||||||||||||||||||||||    
T  768379 atgtttggattatgaatgagtacggaaa-tgaagagtcttggactaaattgttc 768327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 882
Target Start/End: Original strand, 1007660 - 1007721
Alignment:
Q  821 acaccccagaagtctgcattgagagtttaatatcaccttgtttttaatgttaacttgtagat 882  Q
    ||||||||||||| ||| |||||||||||||||| |||| || |||||| ||  ||||||||    
T  1007660 acaccccagaagtgtgcgttgagagtttaatatcgccttattcttaatgctagtttgtagat 1007721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 1931510 - 1931469
Alignment:
Q  304 gtaattttgttgacaaatataaagtgaaggttcatactttgg 345  Q
    ||||||||||||||||  || |||||||||||||||||||||    
T  1931510 gtaattttgttgacaaccatgaagtgaaggttcatactttgg 1931469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 564 - 665
Target Start/End: Complemental strand, 1937064 - 1936964
Alignment:
Q  564 ttgagagattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttac 663  Q
    ||||| ||||| ||||||||  ||| | || ||||||||||||| ||||| || ||   |||||||||| || ||| |||||||||||||||||||| ||    
T  1937064 ttgagggattgtttgtgcatggtttttggttatgatgtttgggttatgaaggaatata-aaaataaagaatcctggtctaaattgttcactatttctcac 1936966  T
Q  664 at 665  Q
    ||    
T  1936965 at 1936964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 1941072 - 1941027
Alignment:
Q  146 attgtggaacccttccattagaaaagataaggaattgccccctctt 191  Q
    |||||||||||||||||||||||||   |||||||||||| |||||    
T  1941072 attgtggaacccttccattagaaaattcaaggaattgccctctctt 1941027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 2697243 - 2697190
Alignment:
Q  146 attgtggaacccttccattagaaaagataaggaattgccccctcttcaagagcc 199  Q
    ||||||||||||||| |||||||||  ||||||||||||| || ||||| ||||    
T  2697243 attgtggaacccttcaattagaaaatttaaggaattgccctcttttcaaaagcc 2697190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 2931466 - 2931515
Alignment:
Q  142 ttcgattgtggaacccttccattagaaaagataaggaattgccccctctt 191  Q
    ||||||||||||||||||||||| |||||   |||||||||||| |||||    
T  2931466 ttcgattgtggaacccttccattcgaaaattcaaggaattgccctctctt 2931515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 589 - 676
Target Start/End: Original strand, 11081805 - 11081891
Alignment:
Q  589 ctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacatgcaagatcctt 676  Q
    ||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  11081805 ctagtgatgatgtttgggttatgaaggagtatggaaa-taaagagtcttggactaaattgtttactattccttacatgagagatcctt 11081891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 586 - 658
Target Start/End: Complemental strand, 23766924 - 23766853
Alignment:
Q  586 tttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactattt 658  Q
    ||||| || ||||||||||| | |||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  23766924 tttctggtaatgatgtttggattatgaaagaatatggaaa-taaagagtcttggactaaattgttcactattt 23766853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 586 - 658
Target Start/End: Complemental strand, 23816772 - 23816701
Alignment:
Q  586 tttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactattt 658  Q
    ||||| || ||||||||||| | |||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  23816772 tttctggtaatgatgtttggattatgaaagaatatggaaa-taaagagtcttggactaaattgttcactattt 23816701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 592 - 663
Target Start/End: Complemental strand, 1427749 - 1427679
Alignment:
Q  592 gtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttac 663  Q
    |||||||||||||||| ||||||||||| || ||||| ||||||||||| |||| ||||||| |||||||||    
T  1427749 gtgatgatgtttgggttatgaaagagtatgg-aaatacagagtcttggattaaactgttcacaatttcttac 1427679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 23754535 - 23754491
Alignment:
Q  143 tcgattgtggaacccttccattagaaaagataaggaattgccccc 187  Q
    ||||||||||||||||||||||||||||   ||||||||||||||    
T  23754535 tcgattgtggaacccttccattagaaaattcaaggaattgccccc 23754491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 23774569 - 23774525
Alignment:
Q  143 tcgattgtggaacccttccattagaaaagataaggaattgccccc 187  Q
    ||||||||||||||||||||||||||||   ||||||||||||||    
T  23774569 tcgattgtggaacccttccattagaaaattcaaggaattgccccc 23774525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 23819990 - 23819946
Alignment:
Q  143 tcgattgtggaacccttccattagaaaagataaggaattgccccc 187  Q
    ||||||||||||||||||||||||||||   ||||||||||||||    
T  23819990 tcgattgtggaacccttccattagaaaattcaaggaattgccccc 23819946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 23861522 - 23861478
Alignment:
Q  143 tcgattgtggaacccttccattagaaaagataaggaattgccccc 187  Q
    ||||||||||||||||||||||||||||   ||||||||||||||    
T  23861522 tcgattgtggaacccttccattagaaaattcaaggaattgccccc 23861478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 23769901 - 23769851
Alignment:
Q  399 aaattgggacaatttgtgagtggcaccattaattggttggcttctaaagat 449  Q
    |||| |||| ||| ||||| |||||| ||||||||||||||||||||||||    
T  23769901 aaatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagat 23769851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 23819749 - 23819699
Alignment:
Q  399 aaattgggacaatttgtgagtggcaccattaattggttggcttctaaagat 449  Q
    |||| |||| ||| ||||| |||||| ||||||||||||||||||||||||    
T  23819749 aaatcgggaaaatatgtgaatggcacgattaattggttggcttctaaagat 23819699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 41973663 - 41973606
Alignment:
Q  459 agtcaatgttttgttgctgctcttgatttagggagtgggtcttatcaagaggttttgc 516  Q
    |||| ||||||| ||| | ||||| ||||||||| || ||||||||||||||||||||    
T  41973663 agtccatgttttattgtttctcttaatttagggaatgagtcttatcaagaggttttgc 41973606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 567 - 675
Target Start/End: Complemental strand, 20019853 - 20019746
Alignment:
Q  567 agagattgcttgtgcattttttctagtgatgatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacatg 666  Q
    ||||||| |||||||||  ||||| || ||||||||||||| ||||| || || ||||  | |||||||||||||||||||||||||| ||||| |||||    
T  20019853 agagatttcttgtgcataatttctggtaatgatgtttgggtcatgaaggaatatggaat-tcaagagtcttggactaaattgttcactctttctaacatg 20019755  T
Q  667 caagatcct 675  Q
    |||||||||    
T  20019754 caagatcct 20019746  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 408 - 667
Target Start/End: Complemental strand, 22672358 - 22672109
Alignment:
Q  408 caatttgtgagtggcaccattaattggttggcttctaaagatcaattgaaaagtcaatgttttgttgctgctcttgatttagggagtgggtcttatcaag 507  Q
    |||| |||||||||||| ||||||||||||||||||||         |||||||||||||||| ||  | |||||||||| |||| || ||||||  |||    
T  22672358 caatgtgtgagtggcacgattaattggttggcttctaa---------gaaaagtcaatgttttattatttctcttgatttggggaatgagtcttacaaag 22672268  T
Q  508 aggttttgcttcctgatgatggtgaggtacatgcatatcccttggttttgactgttttgagagattgcttgtgcattttttctagtgatgatgtttgggt 607  Q
    || ||||| | ||  || |||| |||||| ||||   |   ||| | |||| |||| | || |||||||||  | | |||||| |||| || ||||||||    
T  22672267 agattttgttgcccaattatggagaggtagatgctcgtattttgctcttgagtgttctcagggattgcttgatcttgttttctggtgacgacgtttgggt 22672168  T
Q  608 aatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacatgc 667  Q
    |||||| || || ||||| ||| || ||||||||||||||||||||||||||||||||||    
T  22672167 aatgaaggaatatggaaa-taaggaatcttggactaaattgttcactatttcttacatgc 22672109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 629 - 673
Target Start/End: Complemental strand, 20016205 - 20016161
Alignment:
Q  629 aagagtcttggactaaattgttcactatttcttacatgcaagatc 673  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||    
T  20016205 aagagtcttggactaaattgttcactctttctaacatgcaagatc 20016161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 22672566 - 22672519
Alignment:
Q  224 gatgtatggcttcggatatgatcctgttggtgataattacaaggttgt 271  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  22672566 gatgtattgcttcggatatgaccctgttagtgataattacaaggttgt 22672519  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 824 - 862
Target Start/End: Complemental strand, 22671970 - 22671932
Alignment:
Q  824 ccccagaagtctgcattgagagtttaatatcaccttgtt 862  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  22671970 ccccagaagtttgcgttgagagtttaatatcaccttgtt 22671932  T

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Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 497 - 665
Target Start/End: Original strand, 19727781 - 19727948
Alignment:
Q  497 gtcttatcaagaggttttgcttcctgatgatggtgaggtacatgcatatcccttggttttgactgttttgagagattgcttgtgcattttttctagtgat 596  Q
    |||||| ||||| |||||||| ||||||  ||| | |||| || ||||| | |||  ||||  ||| ||| || |||| ||||||||  ||||| |||||    
T  19727781 gtcttaccaagaagttttgctgcctgattttggagtggtagatacatattctttgcatttgggtgtgttgcgaaattgtttgtgcatggtttctggtgat 19727880  T
Q  597 gatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttacat 665  Q
    ||||||||||| |||| ||| || | ||| ||||||||| ||||||||| |||||||||||||||||||    
T  19727881 gatgtttgggttatgacagaatatgcaaa-taaagagtcatggactaaactgttcactatttcttacat 19727948  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 31144899 - 31144847
Alignment:
Q  142 ttcgattgtggaacccttccattagaaaagataaggaattgccccctcttcaa 194  Q
    |||||||||||||||||||||||||||||   ||||||||||||  |||||||    
T  31144899 ttcgattgtggaacccttccattagaaaattcaaggaattgccctatcttcaa 31144847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 19727414 - 19727463
Alignment:
Q  142 ttcgattgtggaacccttccattagaaaagataaggaattgccccctctt 191  Q
    |||||||||||||||||||| ||||||||   ||||| ||||||||||||    
T  19727414 ttcgattgtggaacccttccgttagaaaattcaaggacttgccccctctt 19727463  T

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Target: scaffold1004 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 826 - 872
Target Start/End: Original strand, 2374 - 2420
Alignment:
Q  826 ccagaagtctgcattgagagtttaatatcaccttgtttttaatgtta 872  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||    
T  2374 ccagaagtctacattgagagtctaatatcaccttgtttttaatgtta 2420  T

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Target: scaffold0760 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 826 - 872
Target Start/End: Original strand, 4869 - 4915
Alignment:
Q  826 ccagaagtctgcattgagagtttaatatcaccttgtttttaatgtta 872  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||    
T  4869 ccagaagtctacattgagagtctaatatcaccttgtttttaatgtta 4915  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 821 - 882
Target Start/End: Complemental strand, 1078003 - 1077942
Alignment:
Q  821 acaccccagaagtctgcattgagagtttaatatcaccttgtttttaatgttaacttgtagat 882  Q
    ||||||||||| |||||| |||||||||||||||||| |||| |||||||||  ||||||||    
T  1078003 acaccccagaaatctgcaatgagagtttaatatcaccatgttcttaatgttaggttgtagat 1077942  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 664
Target Start/End: Complemental strand, 1078211 - 1078145
Alignment:
Q  597 gatgtttgggtaatgaaagagtacggaaaataaagagtcttggactaaattgttcactatttcttaca 664  Q
    ||||||||||| ||||| ||||| ||||| || |||||| |||||||||||||||| | |||||||||    
T  1078211 gatgtttgggttatgaaggagtatggaaa-tagagagtcgtggactaaattgttcaatgtttcttaca 1078145  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 825 - 873
Target Start/End: Original strand, 36577621 - 36577669
Alignment:
Q  825 cccagaagtctgcattgagagtttaatatcaccttgtttttaatgttaa 873  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  36577621 cccagaagtatgcattgagagtttaatatcaccttggtcttaatgttaa 36577669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 624 - 666
Target Start/End: Complemental strand, 51381480 - 51381438
Alignment:
Q  624 aaataaagagtcttggactaaattgttcactatttcttacatg 666  Q
    |||| |||||||||||||||||||||||| |||| ||||||||    
T  51381480 aaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 971 - 914
Alignment:
Q  459 agtcaatgttttgttgctgctcttgatttagggagtgggtcttatcaagaggttttgc 516  Q
    |||| ||||||| ||| | ||||| ||||||||| || ||||||||||||||||||||    
T  971 agtccatgttttattgtttctcttaatttagggaatgagtcttatcaagaggttttgc 914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 624 - 673
Target Start/End: Original strand, 89169 - 89218
Alignment:
Q  624 aaataaagagtcttggactaaattgttcactatttcttacatgcaagatc 673  Q
    |||||||||||||||||||||||||| || | || |||||||| ||||||    
T  89169 aaataaagagtcttggactaaattgtacaatgttccttacatggaagatc 89218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 624 - 661
Target Start/End: Complemental strand, 370810 - 370773
Alignment:
Q  624 aaataaagagtcttggactaaattgttcactatttctt 661  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  370810 aaataaagattcttggactaaattgttcaatatttctt 370773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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