View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4432-Insertion-4 (Length: 1025)

Name: NF4432-Insertion-4
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4432-Insertion-4
NF4432-Insertion-4
[»] chr5 (10 HSPs)
chr5 (8-958)||(2937185-2938137)
chr5 (404-596)||(15368259-15368457)
chr5 (403-485)||(18851082-18851164)
chr5 (323-365)||(29822414-29822456)
chr5 (405-485)||(9818737-9818818)
chr5 (735-804)||(42858129-42858198)
chr5 (421-485)||(38845446-38845510)
chr5 (740-815)||(36639947-36640022)
chr5 (731-796)||(32980572-32980637)
chr5 (439-472)||(34454128-34454161)
[»] chr3 (12 HSPs)
chr3 (423-532)||(31012972-31013083)
chr3 (403-532)||(31708239-31708370)
chr3 (421-486)||(31492769-31492833)
chr3 (431-510)||(41298430-41298509)
chr3 (837-907)||(40339077-40339146)
chr3 (815-912)||(3845214-3845310)
chr3 (679-724)||(46018706-46018751)
chr3 (678-729)||(5407012-5407063)
chr3 (679-709)||(31012878-31012908)
chr3 (815-853)||(39256620-39256658)
chr3 (403-457)||(46853534-46853588)
chr3 (816-889)||(52925714-52925786)
[»] chr1 (23 HSPs)
chr1 (403-510)||(34915044-34915151)
chr1 (421-597)||(40662999-40663180)
chr1 (421-549)||(28267927-28268054)
chr1 (404-485)||(11049253-11049334)
chr1 (423-476)||(36660503-36660556)
chr1 (731-815)||(1514353-1514437)
chr1 (403-467)||(7524134-7524198)
chr1 (734-797)||(213531-213594)
chr1 (403-485)||(1514346-1514428)
chr1 (731-808)||(10324929-10325006)
chr1 (735-815)||(28083883-28083963)
chr1 (403-449)||(2555940-2555986)
chr1 (411-457)||(16556511-16556557)
chr1 (422-484)||(28287355-28287417)
chr1 (403-485)||(30850399-30850481)
chr1 (728-798)||(52339716-52339786)
chr1 (742-815)||(8381976-8382049)
chr1 (424-485)||(28083909-28083970)
chr1 (405-485)||(30557507-30557585)
chr1 (439-472)||(47725245-47725278)
chr1 (439-472)||(47732237-47732270)
chr1 (432-485)||(47892417-47892470)
chr1 (731-815)||(48549005-48549087)
[»] chr4 (19 HSPs)
chr4 (402-485)||(52965853-52965936)
chr4 (403-485)||(1616394-1616475)
chr4 (731-817)||(32818361-32818447)
chr4 (403-481)||(35065070-35065148)
chr4 (405-467)||(45011895-45011957)
chr4 (421-485)||(8604640-8604704)
chr4 (735-815)||(33843987-33844067)
chr4 (403-485)||(32818370-32818452)
chr4 (403-453)||(45694649-45694699)
chr4 (731-808)||(10185211-10185288)
chr4 (750-815)||(37439155-37439220)
chr4 (659-692)||(41580674-41580707)
chr4 (736-815)||(18597050-18597129)
chr4 (403-486)||(44278967-44279050)
chr4 (740-798)||(4243414-4243472)
chr4 (403-457)||(4243418-4243472)
chr4 (660-705)||(24364081-24364127)
chr4 (682-724)||(37500204-37500246)
chr4 (750-799)||(20911913-20911962)
[»] chr8 (12 HSPs)
chr8 (403-485)||(13384654-13384736)
chr8 (731-817)||(16972055-16972141)
chr8 (402-485)||(38868501-38868584)
chr8 (403-485)||(32927895-32927977)
chr8 (740-817)||(26100146-26100223)
chr8 (412-485)||(4662912-4662985)
chr8 (403-484)||(26100146-26100227)
chr8 (840-907)||(4554226-4554292)
chr8 (403-485)||(15677815-15677898)
chr8 (403-485)||(35494993-35495075)
chr8 (419-570)||(31619988-31620145)
chr8 (662-714)||(32837521-32837574)
[»] chr6 (13 HSPs)
chr6 (403-485)||(4910911-4910993)
chr6 (730-808)||(9505787-9505865)
chr6 (424-476)||(46311-46363)
chr6 (426-508)||(10669486-10669568)
chr6 (403-465)||(17225875-17225937)
chr6 (402-485)||(765387-765468)
chr6 (403-467)||(3482067-3482131)
chr6 (743-798)||(10874521-10874576)
chr6 (731-798)||(17225879-17225946)
chr6 (735-802)||(34027412-34027479)
chr6 (837-907)||(578822-578891)
chr6 (403-457)||(1485146-1485200)
chr6 (730-780)||(24982338-24982388)
[»] chr2 (8 HSPs)
chr2 (411-486)||(5533039-5533114)
chr2 (402-472)||(33502253-33502323)
chr2 (423-485)||(42740980-42741042)
chr2 (403-485)||(42982547-42982629)
chr2 (680-724)||(32827620-32827664)
chr2 (740-804)||(42740998-42741062)
chr2 (837-912)||(37561594-37561668)
chr2 (403-485)||(43501128-43501208)
[»] chr7 (11 HSPs)
chr7 (733-815)||(38123659-38123741)
chr7 (423-504)||(1442557-1442638)
chr7 (406-485)||(41386818-41386897)
chr7 (551-597)||(32338742-32338788)
chr7 (403-444)||(17111889-17111930)
chr7 (660-705)||(37886745-37886790)
chr7 (661-724)||(29829273-29829337)
chr7 (815-879)||(45004905-45004968)
chr7 (728-795)||(9183903-9183970)
chr7 (815-888)||(15050203-15050275)
chr7 (403-444)||(32295228-32295269)


Alignment Details
Target: chr5 (Bit Score: 906; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 906; E-Value: 0
Query Start/End: Original strand, 8 - 958
Target Start/End: Original strand, 2937185 - 2938137
Alignment:
Q  8 tttcttacttgtcatgtcaccggagttcaaatcatttctaaatcaaaactcgagaaatgcgagaagaattccaactccgacgacaatctcaactgcacta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2937185 tttcttacttgtcatgtcaccggagttcaaatcatttctaaatcaaaactcgagaaatgcgagaagaattccaactccgacgacaatctcaactgcacta 2937284  T
Q  108 ccaaaatcgttctcagcatggctgttcccagtggctccagcggaggagaggcttccatcgttgcagaattggtggaagttgaagaaaattcaaccaccaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2937285 ccaaaatcgttctcagcatggctgttcccagtggctccagcggaggagaggcttccatcgttgcagaattggtggaagttgaagaaaattcaaccaccaa 2937384  T
Q  208 aatgcagacattgcgtgttccacctgtcattacggttaacaaaacttctgcttatgcggtttatgagttaacatatatacgagtatgatatcactttcct 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  2937385 aatgcagacattgcgtgttccacctgtcattacggttaacaaaacttcagcttatgccgtttatgagttaacatatatacgagtatgatattactttcct 2937484  T
Q  308 ttttaactactagtctatgtttggttttactttgacgcaaattgattttgagtgaattcactctgacttaaagtgatttcttttaggatac--tcgttgt 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || ||||    
T  2937485 ttttaactactagtctatgtttggttttactttgacgcaaattgattttgagtgaactcactctgacttaaagtgatttcttttaggatacgttcattgt 2937584  T
Q  406 aaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaatt 505  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2937585 aaaaatgagtagaaatataaatttgtgtgttataatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaatt 2937684  T
Q  506 gatttagaaaaatgccaaacataattttatagggttagaattgccgcatttgaaaagcacttctatggcatctaaacatgaaaccaaacacctttttagt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2937685 gatttagaaaaatgccaaacataattttatagggttagaattgccgcatttgaaaagcacttctatggcatctaaacatgaaaccaaacacctttttagt 2937784  T
Q  606 gtttttgtggatgatgcaatacaaggcaagtaatttgaaatctatggttaaggatgtgtttggttctacgatgaaaaaattgattttgaatgaattgatt 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2937785 gtttttgtggatgatgcaatacaaggcaagtaatttgaaatctatggttaaggatgtgtttggttctacgatgaaaaaattgattttgaatgaattgatt 2937884  T
Q  706 ttagctaaagatgagttgagggtatatacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaatt 805  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2937885 ttagctaaaggtgagttgaaggtatatacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaatt 2937984  T
Q  806 ctaggttcaaattctactagagagtaatcatacatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatac 905  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2937985 ctaggttcaaattctactagagagtaatcatacatgtcaaaatcaatttttactcctctagaatcaattttggctcctccaaaataaaaaccaaacatac 2938084  T
Q  906 accaagttatggttttggatgattctatataaaagcaaatggatgcaagtgga 958  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2938085 accaagttatggttttggatgattctatataaaagcaaatggatgcaagtgga 2938137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 404 - 596
Target Start/End: Complemental strand, 15368457 - 15368259
Alignment:
Q  404 gtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaa 503  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||| |||||||||| ||||||||||||||||    
T  15368457 gtaaaactgagttgaattataaatttgtgtgttagaatcaattctataatcaaaagttacaactagtagcttcaagtagaattgcttttagttcccaaaa 15368358  T
Q  504 ttgatt--taga-aaaatgccaaacataattttatagggttagaattgc----cgcatttgaaaagcacttctatggcatctaaacatgaaaccaaacac 596  Q
    ||||||  | || ||||||||| |||||||||||||| || || |||||     ||| |||||||||||||||| | |||||| |  |||||||||||||    
T  15368357 ttgatttctcgataaaatgccatacataattttatagagtaag-attgcttttagcacttgaaaagcacttctaggacatctagaagtgaaaccaaacac 15368259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 18851082 - 18851164
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||| |||||  || ||||||| ||||||| | ||||||||||| ||||||| |||||||||  |||||| |||||||||    
T  18851082 tgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 18851164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 29822456 - 29822414
Alignment:
Q  323 tatgtttggttttactttgacgcaaattgattttgagtgaatt 365  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  29822456 tatgtttggttttactttgactaaaattgattttgagtgaatt 29822414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 405 - 485
Target Start/End: Complemental strand, 9818818 - 9818737
Alignment:
Q  405 taaaaatgagtagaaatataaatttgtgtgttagaa-tcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||| ||||| ||| ||||||||||||| | | || ||||||||||||||||| |||||||||  |||||| |||||||||    
T  9818818 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 9818737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 735 - 804
Target Start/End: Complemental strand, 42858198 - 42858129
Alignment:
Q  735 attcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaat 804  Q
    |||| ||||||||| ||||||||  ||||||||  | | ||||||||||||||||||||||||| |||||    
T  42858198 attcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaat 42858129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 421 - 485
Target Start/End: Complemental strand, 38845510 - 38845446
Alignment:
Q  421 tataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    |||| |||||||||| | |||||||||||||||||||  ||||||||  |||||| |||||||||    
T  38845510 tatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagtagaat 38845446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 815
Target Start/End: Complemental strand, 36640022 - 36639947
Alignment:
Q  740 tgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaa 815  Q
    ||||||||| || |||||||||||||||| | |||||| ||||| |||||||| ||||| ||| ||| || |||||    
T  36640022 tgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaattagaagctacaatttccagcttcaa 36639947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 731 - 796
Target Start/End: Complemental strand, 32980637 - 32980572
Alignment:
Q  731 atacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaag 796  Q
    |||||||| ||||||||||| | || || ||||||||||| ||||||||| || |||||| |||||    
T  32980637 atacattcatgtaaaagtaactcgagcaataaatttgaatgtaaaaatcatttgtagaatcaaaag 32980572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 34454128 - 34454161
Alignment:
Q  439 aatcaattctagaatcaaaggctacaaatagtag 472  Q
    |||||||| |||||||||||||||||||||||||    
T  34454128 aatcaattatagaatcaaaggctacaaatagtag 34454161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 423 - 532
Target Start/End: Complemental strand, 31013083 - 31012972
Alignment:
Q  423 taaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaattgattta--gaaaaatgc 520  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||| |||||||||||||||  |||||||||    
T  31013083 taaatttgtgtgttagaatcaattctagattcaaaggctacaaatagtaggttcaagtagaattgcttttagtccccaaaattgatttattgaaaaatgc 31012984  T
Q  521 caaacataattt 532  Q
    ||||||||||||    
T  31012983 caaacataattt 31012972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 403 - 532
Target Start/End: Original strand, 31708239 - 31708370
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaa 502  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||| |||| |||||||| | | ||    
T  31708239 tgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaatagtagcttcgagtataattgcttttagtcctcgaa 31708338  T
Q  503 attgattta--gaaaaatgccaaacataattt 532  Q
    |||||||||   ||||||||||||||||||||    
T  31708339 attgatttatcaaaaaatgccaaacataattt 31708370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 421 - 486
Target Start/End: Complemental strand, 31492833 - 31492769
Alignment:
Q  421 tataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatt 486  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| || |||||||    
T  31492833 tataaatttgtgtgtta-aatcaattctagaatcaaaagctacaaatagttgcttcaaatagaatt 31492769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 431 - 510
Target Start/End: Complemental strand, 41298509 - 41298430
Alignment:
Q  431 tgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaattgattt 510  Q
    |||| |||||||||||||||||| |||  |||||||||||||||| |  ||||||| |||||||||| ||||||| ||||    
T  41298509 tgtgctagaatcaattctagaataaaaaactacaaatagtagcttcatttagaattacttttagttcgcaaaattaattt 41298430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 837 - 907
Target Start/End: Complemental strand, 40339146 - 40339077
Alignment:
Q  837 acatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacac 907  Q
    ||||||||||||||||| | ||||||||| ||||||||||||| | |||||||   |||||||||||||||    
T  40339146 acatgtcaaaatcaattat-actcctctaaaatcaattttggcccttccaaaagttaaaccaaacatacac 40339077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 815 - 912
Target Start/End: Original strand, 3845214 - 3845310
Alignment:
Q  815 aattctactagagagtaatcatacatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacaccaagt 912  Q
    ||||||||| ||||  || || ||||||||||||||| || ||| |||||| |||||||||||| | ||||||||    |||||||||||||||||||    
T  3845214 aattctacttgagatcaaacaaacatgtcaaaatcaa-ttctacacctctagaatcaattttggttactccaaaagtggaaccaaacatacaccaagt 3845310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 679 - 724
Target Start/End: Complemental strand, 46018751 - 46018706
Alignment:
Q  679 aaaaaattgattttgaatgaattgattttagctaaagatgagttga 724  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||    
T  46018751 aaaagattgattttgagtgaattgattctagctaaagatgagttga 46018706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 729
Target Start/End: Complemental strand, 5407063 - 5407012
Alignment:
Q  678 gaaaaaattgattttgaatgaattgattttagctaaagatgagttgagggta 729  Q
    ||||||||||||||||| |||||||||| ||||||||  |||||||| ||||    
T  5407063 gaaaaaattgattttgagtgaattgattctagctaaaattgagttgaaggta 5407012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 679 - 709
Target Start/End: Original strand, 31012878 - 31012908
Alignment:
Q  679 aaaaaattgattttgaatgaattgattttag 709  Q
    |||||||||||||||||||||||||||||||    
T  31012878 aaaaaattgattttgaatgaattgattttag 31012908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 815 - 853
Target Start/End: Complemental strand, 39256658 - 39256620
Alignment:
Q  815 aattctactagagagtaatcatacatgtcaaaatcaatt 853  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  39256658 aattctacttgagagtaatcaaacatgtcaaaatcaatt 39256620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 403 - 457
Target Start/End: Original strand, 46853534 - 46853588
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaa 457  Q
    ||||||| ||||| |||  ||||||||| |||||| |||||||||||||||||||    
T  46853534 tgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaa 46853588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 889
Target Start/End: Original strand, 52925714 - 52925786
Alignment:
Q  816 attctactagagagtaatcatacatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaa 889  Q
    |||||||  ||||| || || ||||||||||||||||| | || |||||| ||||||||||| |||||||||||    
T  52925714 attctacgtgagagcaaccaaacatgtcaaaatcaattat-acacctctagaatcaattttgactcctccaaaa 52925786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 5e-25; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 403 - 510
Target Start/End: Complemental strand, 34915151 - 34915044
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaa 502  Q
    ||||||| ||||| ||| |||||| | |||||||||||||||||||||||||||| |||||||| | |||||| || |||||||||||||||| | ||||    
T  34915151 tgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacaaagaatagcttcaactagaatttcttttagtcctcaaa 34915052  T
Q  503 attgattt 510  Q
    ||||||||    
T  34915051 attgattt 34915044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 421 - 597
Target Start/End: Original strand, 40662999 - 40663180
Alignment:
Q  421 tataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaattgattt---agaaaaa 517  Q
    |||||||||||||||||  ||||||||| |||||||| |||||||||| |||||||||||||||||  |||||||    |||||||||||   | |||||    
T  40662999 tataaatttgtgtgtta--atcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctataaaattgatttctcaaaaaaa 40663096  T
Q  518 tgccaaacataattttatagggttagaattgc----cgcatttgaaaagcacttctatggcatctaaacatgaaaccaaacacc 597  Q
    || |||| |||||||||||| ||   ||||||      |||||||||||||||| |||||||||||||  ||||| ||||||||    
T  40663097 tgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttatggcatctaaaagtgaaaacaaacacc 40663180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 421 - 549
Target Start/End: Original strand, 28267927 - 28268054
Alignment:
Q  421 tataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaattgattt--agaaaaat 518  Q
    ||||||||| || |||| ||| ||||||||||||| |  ||||||| |||| ||  |||||||||| ||||||||  |||||||||||||  | ||||||    
T  28267927 tataaatttatgcgttaaaattaattctagaatcataaactacaaa-agtacct--aagtagaattccttttagtctccaaaattgatttctaaaaaaat 28268023  T
Q  519 gccaaacataattttatagggttagaattgc 549  Q
    |||||||| |||||||| | |||||||||||    
T  28268024 gccaaacaaaattttatggagttagaattgc 28268054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 404 - 485
Target Start/End: Complemental strand, 11049334 - 11049253
Alignment:
Q  404 gtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    |||||| ||| | ||| ||||||||||||||| | |||||||| |||||||||| |||||||||  |||||| |||||||||    
T  11049334 gtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaat 11049253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 423 - 476
Target Start/End: Original strand, 36660503 - 36660556
Alignment:
Q  423 taaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagcttt 476  Q
    ||||||||||||||||| |||||| |||||||||| |||| |||||||||||||    
T  36660503 taaatttgtgtgttagattcaattttagaatcaaaagctagaaatagtagcttt 36660556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 731 - 815
Target Start/End: Complemental strand, 1514437 - 1514353
Alignment:
Q  731 atacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaa 815  Q
    |||||||| ||||||| | ||||||||| ||||||||  | ||||||||||||||| ||| ||||||| ||||| |||| |||||    
T  1514437 atacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaa 1514353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 7524198 - 7524134
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaat 467  Q
    ||||||| ||||| ||| ||||||||||||||| | ||||||||||| ||||||| |||||||||    
T  7524198 tgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaat 7524134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 734 - 797
Target Start/End: Original strand, 213531 - 213594
Alignment:
Q  734 cattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagc 797  Q
    ||||| ||||||||| |||||||||  |||||||| |||||||||||||| |||||| ||||||    
T  213531 cattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaatcaaaagc 213594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 1514428 - 1514346
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||||||||| |||  |||||||||||||| | |||||||| || ||| ||| |||||||||  |||||| |||||||||    
T  1514428 tgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaat 1514346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 731 - 808
Target Start/End: Original strand, 10324929 - 10325006
Alignment:
Q  731 atacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattcta 808  Q
    |||||||  ||||||||| |||  |||| ||||||||| | ||||||||||||||||||| ||||||| ||| |||||    
T  10324929 atacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaatttcta 10325006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 735 - 815
Target Start/End: Original strand, 28083883 - 28083963
Alignment:
Q  735 attcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaa 815  Q
    |||| ||||||||| || ||||| | |||||||  | ||||||| ||||||||||| ||||||| |||||||||| |||||    
T  28083883 attcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaa 28083963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 403 - 449
Target Start/End: Complemental strand, 2555986 - 2555940
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattcta 449  Q
    ||||||| ||||| ||| ||||||||||| |||||||||||||||||    
T  2555986 tgtaaaagtgagttgaattataaatttgtatgttagaatcaattcta 2555940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 411 - 457
Target Start/End: Complemental strand, 16556557 - 16556511
Alignment:
Q  411 tgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaa 457  Q
    ||||| ||| ||| ||||||||||| |||||||||||||||||||||    
T  16556557 tgagttgaattatgaatttgtgtgtcagaatcaattctagaatcaaa 16556511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 422 - 484
Target Start/End: Original strand, 28287355 - 28287417
Alignment:
Q  422 ataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaa 484  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||||||  | |||| ||||||||    
T  28287355 ataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaa 28287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 30850399 - 30850481
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||| ||||| ||| ||||||||||| ||||| ||||||||||| ||| |||  ||||||||  ||| || |||||||||    
T  30850399 tgtaaaagtgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaat 30850481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 728 - 798
Target Start/End: Original strand, 52339716 - 52339786
Alignment:
Q  728 tatatacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagct 798  Q
    |||||||||||||||||| || | ||||||| ||||||||| | ||||| |||||| ||| |||| |||||    
T  52339716 tatatacattcgtgtaaatgtgacttgaacaataaatttgagtataaaactcaattctagtattagaagct 52339786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 742 - 815
Target Start/End: Complemental strand, 8382049 - 8381976
Alignment:
Q  742 taaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaa 815  Q
    ||||||| ||||||||| |||| |||||| |||||||||||| ||||| || | ||| ||| |||||| |||||    
T  8382049 taaaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaactagaggctacaatttctagcttcaa 8381976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 28083909 - 28083970
Alignment:
Q  424 aaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    |||||||||||| | ||| |||| |||||||||| |||||||||  |||||| |||||||||    
T  28083909 aaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaat 28083970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 405 - 485
Target Start/End: Complemental strand, 30557585 - 30557507
Alignment:
Q  405 taaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||| ||||| ||| ||||||||||||||  | |||||||||||||||||||  ||||||||  |||||| || ||||||    
T  30557585 taaaagtgagttgaactataaatttgtgtg--aaaatcaattctagaatcaaaaactacaaatcctagcttcaactagaat 30557507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 47725245 - 47725278
Alignment:
Q  439 aatcaattctagaatcaaaggctacaaatagtag 472  Q
    |||||||| |||||||||||||||||||||||||    
T  47725245 aatcaattatagaatcaaaggctacaaatagtag 47725278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 47732237 - 47732270
Alignment:
Q  439 aatcaattctagaatcaaaggctacaaatagtag 472  Q
    |||||||| |||||||||||||||||||||||||    
T  47732237 aatcaattatagaatcaaaggctacaaatagtag 47732270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 432 - 485
Target Start/End: Original strand, 47892417 - 47892470
Alignment:
Q  432 gtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    |||||| ||||||||||||||||||| ||| ||| |  ||||||||||||||||    
T  47892417 gtgttaaaatcaattctagaatcaaaagcttcaatttctagctttaagtagaat 47892470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 731 - 815
Target Start/End: Original strand, 48549005 - 48549087
Alignment:
Q  731 atacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaa 815  Q
    |||||||  ||||||||| ||||||||| |||||  || |||||||||||||| |||||| | ||||| ||| |||||| |||||    
T  48549005 atacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaatcagaagctacaatttctagcttcaa 48549087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 7e-18; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 402 - 485
Target Start/End: Original strand, 52965853 - 52965936
Alignment:
Q  402 ttgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    |||||||| ||||| ||| ||||||||| |||||||||||||||| |||||||||| |||| |||||||| ||| |||||||||    
T  52965853 ttgtaaaagtgagttgaattataaatttatgtgttagaatcaattttagaatcaaaagctataaatagtaacttcaagtagaat 52965936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 1616475 - 1616394
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||||||||| ||| | ||||  |||||||  |||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  1616475 tgtaaaaatgagttgaactttaaacatgtgtgtgggaatcaattctagaatcaaaagctacaaattgtagc-ttaagtagaat 1616394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 731 - 817
Target Start/End: Original strand, 32818361 - 32818447
Alignment:
Q  731 atacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaaat 817  Q
    |||||||| ||||||||| ||||||||  ||||||||  |  ||||||||||| |||||| ||||||| |||||||||| |||||||    
T  32818361 atacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaat 32818447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 35065148 - 35065070
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagta 481  Q
    ||||||| ||||| || |||||||||||||||| | ||||||||||||||||||| |  ||||||| |||||| |||||    
T  35065148 tgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatcaaaagtcacaaatactagcttcaagta 35065070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 405 - 467
Target Start/End: Complemental strand, 45011957 - 45011895
Alignment:
Q  405 taaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaat 467  Q
    ||||| |||||| || ||||||||||||||| | ||||||||||||||||||| |||||||||    
T  45011957 taaaagtgagtaaaattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaat 45011895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 421 - 485
Target Start/End: Original strand, 8604640 - 8604704
Alignment:
Q  421 tataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||||||||||| | |||||||||||||||| || |||||||||  |||||| |||||||||    
T  8604640 tataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaat 8604704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 735 - 815
Target Start/End: Complemental strand, 33844067 - 33843987
Alignment:
Q  735 attcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaa 815  Q
    |||| ||||||| ||||||||||| ||||||||| | | |||||||||| |||||| ||||||| ||| |||||| |||||    
T  33844067 attcatgtaaaaataagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagcttcaa 33843987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 32818370 - 32818452
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||| | ||| ||| ||||||||||||||  | ||||||||||||||||||| |||||||||  |||||| || ||||||    
T  32818370 tgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaat 32818452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 45694699 - 45694649
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaat 453  Q
    |||||||||||||  || ||||||| |||||||||||||||||||||||||    
T  45694699 tgtaaaaatgagttcaactataaatgtgtgtgttagaatcaattctagaat 45694649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 731 - 808
Target Start/End: Complemental strand, 10185288 - 10185211
Alignment:
Q  731 atacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattcta 808  Q
    |||||||  ||||||||| |||| |||| ||||||||| | |||| ||||||| |||||| ||||||||||| |||||    
T  10185288 atacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagcttcaatttcta 10185211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 750 - 815
Target Start/End: Complemental strand, 37439220 - 37439155
Alignment:
Q  750 agttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaa 815  Q
    ||||||||| |||| |||| | |||||||||||||||||||||||||||  || |||||| |||||    
T  37439220 agttgaacaataaaattgagtgtaaaaatcaattatagaattaaaagctataatttctagcttcaa 37439155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 659 - 692
Target Start/End: Original strand, 41580674 - 41580707
Alignment:
Q  659 atgtgtttggttctacgatgaaaaaattgatttt 692  Q
    ||||||||||||||||||||||||||||||||||    
T  41580674 atgtgtttggttctacgatgaaaaaattgatttt 41580707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 815
Target Start/End: Complemental strand, 18597129 - 18597050
Alignment:
Q  736 ttcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaa 815  Q
    |||| |||||||| | || |||| ||| ||||||| | ||||||||||||||||| ||||| |||||||| ||| |||||    
T  18597129 ttcgagtaaaagtgaatttaacaataactttgaatgttaaaatcaattatagaatcaaaaggttcaaattatagcttcaa 18597050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 486
Target Start/End: Original strand, 44278967 - 44279050
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatt 486  Q
    ||||||||||| | ||| || |||||| |||||||||||||||| || ||| ||| | |||| ||||||| || ||||||||||    
T  44278967 tgtaaaaatgatttgaattaaaaatttatgtgttagaatcaattttaaaataaaaagatacatatagtagtttcaagtagaatt 44279050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 740 - 798
Target Start/End: Complemental strand, 4243472 - 4243414
Alignment:
Q  740 tgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagct 798  Q
    ||||||||| ||| ||||| ||||||||| | |||||||||||| |||||| |||||||    
T  4243472 tgtaaaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagct 4243414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 403 - 457
Target Start/End: Complemental strand, 4243472 - 4243418
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaa 457  Q
    ||||||| |||||||||  ||||||||| |||| | |||||||||||||||||||    
T  4243472 tgtaaaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaa 4243418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 660 - 705
Target Start/End: Original strand, 24364081 - 24364127
Alignment:
Q  660 tgtgtttggttctacgatga-aaaaattgattttgaatgaattgatt 705  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||    
T  24364081 tgtgtttggttttatgatgacaaaaattgattttgaatgaattgatt 24364127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 682 - 724
Target Start/End: Original strand, 37500204 - 37500246
Alignment:
Q  682 aaattgattttgaatgaattgattttagctaaagatgagttga 724  Q
    |||||||||||||||||||||||||||| ||||  ||||||||    
T  37500204 aaattgattttgaatgaattgattttagttaaaattgagttga 37500246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 750 - 799
Target Start/End: Original strand, 20911913 - 20911962
Alignment:
Q  750 agttgaacattaaatttgaatttaaaaatcaattatagaattaaaagctt 799  Q
    ||||||| | ||||||||||  ||||||||||||||||||||| ||||||    
T  20911913 agttgaataataaatttgaacataaaaatcaattatagaattagaagctt 20911962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 13384654 - 13384736
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||| ||||| ||| ||||||||||||||| | ||||||||||||||||||| |||||||||  |||||| || ||||||    
T  13384654 tgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaat 13384736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 731 - 817
Target Start/End: Original strand, 16972055 - 16972141
Alignment:
Q  731 atacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaaat 817  Q
    |||||||| ||||||||| | ||||||| ||||||||  |||||||||||||| || |||||||| || |||||||||| |||||||    
T  16972055 atacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactacaaattctagcttcaaat 16972141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 402 - 485
Target Start/End: Complemental strand, 38868584 - 38868501
Alignment:
Q  402 ttgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    |||||||| ||||| ||| ||||||||||||||| | |||||||| ||||| |||| |||||||||  |||||| |||||||||    
T  38868584 ttgtaaaattgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaat 38868501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 32927977 - 32927895
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||| ||||| ||| ||||||||||||||| | ||| ||||||| ||||||| |||||||||  |||||| |||||||||    
T  32927977 tgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaat 32927895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 740 - 817
Target Start/End: Original strand, 26100146 - 26100223
Alignment:
Q  740 tgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaaat 817  Q
    ||||||||| ||||||||  ||||||||  | ||||||||||||||||||| ||||||| ||||| |||| |||||||    
T  26100146 tgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaat 26100223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 412 - 485
Target Start/End: Original strand, 4662912 - 4662985
Alignment:
Q  412 gagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    |||| ||| |||| |||||||||| | |||||||||||||| |||| |||||||||  |||||| |||||||||    
T  4662912 gagttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaagtagaat 4662985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 403 - 484
Target Start/End: Original strand, 26100146 - 26100227
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaa 484  Q
    ||||||| ||||| |||  |||||||||||||| | |||||||| |||||||||| |||||||||  |||||| || |||||    
T  26100146 tgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaa 26100227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 840 - 907
Target Start/End: Complemental strand, 4554292 - 4554226
Alignment:
Q  840 tgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacac 907  Q
    |||||||||||||||| || |||||| ||||||||| ||||| ||||||||   ||||||||||||||    
T  4554292 tgtcaaaatcaatttt-acacctctagaatcaatttaggctcatccaaaatttgaaccaaacatacac 4554226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 15677815 - 15677898
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaa-tcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||| ||||||| ||| ||||||||||||||| | || ||||||||| ||||||| |||| ||||  |||||| |||||||||    
T  15677815 tgtaacaatgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaat 15677898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 35495075 - 35494993
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||| | ||| ||| |||| |||||||||| | || |||||||||||||||| |||||||||  |||||| | |||||||    
T  35495075 tgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagcttcatgtagaat 35494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 419 - 570
Target Start/End: Complemental strand, 31620145 - 31619988
Alignment:
Q  419 aatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaattgattta---gaaa 515  Q
    ||||||||||| | ||||| ||||||||||| |||||||  ||| ||||| |||||| || || |||| | ||  |||| || ||||||||||    |||    
T  31620145 aatataaatttatatgttataatcaattctataatcaaacactataaataatagcttaaattaaaattacgttatgttctcataattgatttatataaaa 31620046  T
Q  516 aatgccaaacataattttatagggttagaattgc---cgcatttgaaaagcacttcta 570  Q
    |||  ||||||||||||||| | |||| ||||||    |||||||||||| |||||||    
T  31620045 aatatcaaacataattttattgtgttataattgctttggcatttgaaaaggacttcta 31619988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 662 - 714
Target Start/End: Complemental strand, 32837574 - 32837521
Alignment:
Q  662 tgtttggttctacgat-gaaaaaattgattttgaatgaattgattttagctaaa 714  Q
    |||||||||||||| | | ||||||| ||||||| |||||||||||||||||||    
T  32837574 tgtttggttctacggtagcaaaaattaattttgattgaattgattttagctaaa 32837521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 4910993 - 4910911
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||| ||||| ||| ||||||||||| ||| | ||||||||||||||||||| |||||||||  |||||| |||||||||    
T  4910993 tgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 4910911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 730 - 808
Target Start/End: Complemental strand, 9505865 - 9505787
Alignment:
Q  730 tatacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattcta 808  Q
    |||| |||| |||||||||  |||||||| ||||||||| ||||||||||||| ||||||| ||||||| ||| |||||    
T  9505865 tatatattcatgtaaaagtgtgttgaacaataaatttgagtttaaaaatcaatcatagaatcaaaagctccaatttcta 9505787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 424 - 476
Target Start/End: Original strand, 46311 - 46363
Alignment:
Q  424 aaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagcttt 476  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||| |||||    
T  46311 aaatttgtttgttagaatctattctagaatcaaaagctacaaatagttgcttt 46363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 426 - 508
Target Start/End: Original strand, 10669486 - 10669568
Alignment:
Q  426 atttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaattgat 508  Q
    |||| ||||||||||||||||| ||||| |||  |||||||||||| ||| ||||||| ||  |||||||  |||||||||||    
T  10669486 atttttgtgttagaatcaattccagaataaaaaactacaaatagtaccttcaagtagatttatttttagtctccaaaattgat 10669568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 403 - 465
Target Start/End: Complemental strand, 17225937 - 17225875
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaa 465  Q
    ||||||| ||||| ||| ||||||||||| ||| | ||||||||||||||||||| |||||||    
T  17225937 tgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaa 17225875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 402 - 485
Target Start/End: Original strand, 765387 - 765468
Alignment:
Q  402 ttgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    |||||||||||||| ||| ||||||||| | |  ||  |||||||||||||||||| |||||||||  |||||| |||||||||    
T  765387 ttgtaaaaatgagttgaactataaatttctttaata--atcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 765468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 3482131 - 3482067
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaat 467  Q
    ||||||| | ||| ||| |||||| |||||||| | ||||||||||| |||||||||||||||||    
T  3482131 tgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaat 3482067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 743 - 798
Target Start/End: Complemental strand, 10874576 - 10874521
Alignment:
Q  743 aaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagct 798  Q
    |||||| ||||||||| ||| ||||||| |||||||||||| |||||| |||||||    
T  10874576 aaaagtgagttgaacactaagtttgaatgtaaaaatcaattctagaatcaaaagct 10874521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 731 - 798
Target Start/End: Complemental strand, 17225946 - 17225879
Alignment:
Q  731 atacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagct 798  Q
    |||||||| ||||||| | ||||||||  |||||||| || |||||||||||| |||||| |||||||    
T  17225946 atacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagct 17225879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 802
Target Start/End: Original strand, 34027412 - 34027479
Alignment:
Q  735 attcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaa 802  Q
    |||| ||||| ||| ||||||| | ||||||||| | |||||||||||| |||||| |||||||||||    
T  34027412 attcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagcttcaa 34027479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 837 - 907
Target Start/End: Complemental strand, 578891 - 578822
Alignment:
Q  837 acatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacac 907  Q
    ||||||||||||||||||| ||||||||| ||||||| ||| | | |||||| |  |||||||||||||||    
T  578891 acatgtcaaaatcaatttt-actcctctaaaatcaatcttgtcccttccaaacttgaaaccaaacatacac 578822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 403 - 457
Target Start/End: Original strand, 1485146 - 1485200
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaa 457  Q
    ||||||| ||||| |||  ||||||||| |||||| |||||||||||||||||||    
T  1485146 tgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaa 1485200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 730 - 780
Target Start/End: Complemental strand, 24982388 - 24982338
Alignment:
Q  730 tatacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatca 780  Q
    ||||||||| |||||||||||||||||||  |||||||| | |||||||||    
T  24982388 tatacattcatgtaaaagtaagttgaacaaaaaatttgagtgtaaaaatca 24982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 411 - 486
Target Start/End: Original strand, 5533039 - 5533114
Alignment:
Q  411 tgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatt 486  Q
    ||||| ||| ||||||||| ||||||  ||||||||  ||||||||| ||||||||||||||||| ||||||||||    
T  5533039 tgagttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaatagtagcttcaagtagaatt 5533114  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 402 - 472
Target Start/End: Complemental strand, 33502323 - 33502253
Alignment:
Q  402 ttgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtag 472  Q
    |||||||| ||||| ||| ||||||| ||||||| | |||||||| |||||||||| | ||||||||||||    
T  33502323 ttgtaaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaagttacaaatagtag 33502253  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 423 - 485
Target Start/End: Complemental strand, 42741042 - 42740980
Alignment:
Q  423 taaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    |||||||| |||| | ||||||||||||||||||| |||||||||  |||||| |||||||||    
T  42741042 taaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaat 42740980  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 42982629 - 42982547
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||| ||||| | || |||||||||||||| | |||||||||| |||||||| ||||||| |  |||||| |||||||||    
T  42982629 tgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaat 42982547  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 680 - 724
Target Start/End: Complemental strand, 32827664 - 32827620
Alignment:
Q  680 aaaaattgattttgaatgaattgattttagctaaagatgagttga 724  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||    
T  32827664 aaaaattgattttgagtgaattgattttagataaaaatgagttga 32827620  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 740 - 804
Target Start/End: Complemental strand, 42741062 - 42740998
Alignment:
Q  740 tgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaat 804  Q
    ||||||||| ||||| ||| ||||||||| | |||||||||||| |||||| ||||||| |||||    
T  42741062 tgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaat 42740998  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 837 - 912
Target Start/End: Complemental strand, 37561668 - 37561594
Alignment:
Q  837 acatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacaccaagt 912  Q
    ||||||||||||||||||| || |||||| ||||||||  | ||| ||||||||  ||||||||||||||| ||||    
T  37561668 acatgtcaaaatcaatttt-acacctctagaatcaattccgcctcatccaaaattgaaaccaaacatacacaaagt 37561594  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 43501208 - 43501128
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    ||||||| ||||| ||| ||||| |||||||  |||||||||||||| ||||||| |||||||||  ||| || |||||||||    
T  43501208 tgtaaaactgagttgaattataattttgtgt--tagaatcaattctaaaatcaaaagctacaaatcctagtttcaagtagaat 43501128  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 733 - 815
Target Start/End: Original strand, 38123659 - 38123741
Alignment:
Q  733 acattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttcaa 815  Q
    |||||| ||||||||| |||||| || ||||||||| | |||||||||||| |||||||| ||||| ||| |||||| |||||    
T  38123659 acattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttcaa 38123741  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 423 - 504
Target Start/End: Complemental strand, 1442638 - 1442557
Alignment:
Q  423 taaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaat 504  Q
    ||||||||||| |||||||||||| |||||||||| |||| | ||| || ||| |||||||||| ||||||||  |||||||    
T  1442638 taaatttgtgttttagaatcaattatagaatcaaaagctatacataataacttcaagtagaattgcttttagtatccaaaat 1442557  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 406 - 485
Target Start/End: Original strand, 41386818 - 41386897
Alignment:
Q  406 aaaaatgagtagaaatataaatttgtgtgttagaatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 485  Q
    |||| ||||| ||| ||||||||||||||| |  |||||||||||||| ||| |||||||||  |||||| |||||||||    
T  41386818 aaaagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaat 41386897  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 32338788 - 32338742
Alignment:
Q  551 gcatttgaaaagcacttctatggcatctaaacatgaaaccaaacacc 597  Q
    |||||||| |||||||||||  |||||||||||||||||||||||||    
T  32338788 gcatttgagaagcacttctaaagcatctaaacatgaaaccaaacacc 32338742  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 17111930 - 17111889
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaa 444  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  17111930 tgtaaaaatgagtagaattataaatttgtgtgtaagaatcaa 17111889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 660 - 705
Target Start/End: Original strand, 37886745 - 37886790
Alignment:
Q  660 tgtgtttggttctacgatgaaaaaattgattttgaatgaattgatt 705  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||||    
T  37886745 tgtgtttggttctgcgataaaaaaattaattttgaatgaattgatt 37886790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 661 - 724
Target Start/End: Original strand, 29829273 - 29829337
Alignment:
Q  661 gtgtttggttctacgatga-aaaaattgattttgaatgaattgattttagctaaagatgagttga 724  Q
    ||||||||| ||||| ||| ||||||||||| |||||||||||||| | |||||| |||||||||    
T  29829273 gtgtttggtcctacggtgataaaaattgattctgaatgaattgattctggctaaaaatgagttga 29829337  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 815 - 879
Target Start/End: Complemental strand, 45004968 - 45004905
Alignment:
Q  815 aattctactagagagtaatcatacatgtcaaaatcaatttttactcctctacaatcaattttggc 879  Q
    |||| ||||||||||||| || ||||||||||||||| || ||| |||||| |||||||||||||    
T  45004968 aattatactagagagtaaccaaacatgtcaaaatcaa-ttctacacctctagaatcaattttggc 45004905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 795
Target Start/End: Original strand, 9183903 - 9183970
Alignment:
Q  728 tatatacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaa 795  Q
    |||||||||||||||||  || | ||||||| ||||||||||| ||||| |||||| ||| |||||||    
T  9183903 tatatacattcgtgtaagtgtgacttgaacaataaatttgaatataaaactcaattctagtattaaaa 9183970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 815 - 888
Target Start/End: Complemental strand, 15050275 - 15050203
Alignment:
Q  815 aattctactagagagtaatcatacatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaa 888  Q
    ||||||||  |||||||| || ||| ||||||||||||| || | | |||| ||||||||||||||||||||||    
T  15050275 aattctacatgagagtaaccaaacaggtcaaaatcaattctt-cacttctagaatcaattttggctcctccaaa 15050203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 32295269 - 32295228
Alignment:
Q  403 tgtaaaaatgagtagaaatataaatttgtgtgttagaatcaa 444  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||    
T  32295269 tgtaaaagtgagttgaattataaatttgtgtgttagaatcaa 32295228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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