View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432-Insertion-5 (Length: 839)
Name: NF4432-Insertion-5
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 458 - 740
Target Start/End: Complemental strand, 55508645 - 55508366
Alignment:
| Q |
458 |
ttctttctctcaattatgaattatatcatgaattttacacttcaaatcagcattttagcatgtctactctacatgtccatttccttagatgtggaagctt |
557 |
Q |
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| T |
55508645 |
ttctttctctcaattatgaattatatcatgaattttatacttcaaatcagcattttagtatgtctactctacatgtccatttccttagatgtggaagctt |
55508546 |
T |
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| Q |
558 |
ggcctaaattaatttgtgtgcaagataaagcagcgtgtggaaggaggagtttctactcattatagcacgcacagaaacatgaaaggccaaaacctcaaga |
657 |
Q |
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| T |
55508545 |
ggcctaaattaatttgtgtgcaagat-aagcagcgtgtggaaggaggagtttctactcattatagcacgcacagaaacatgaaaggcc-aaaccccaaga |
55508448 |
T |
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| Q |
658 |
gtgtttctgggttgggaacacgaaatctgttaaagaatgttctgaaattaagtgtttcttaattacaagtattttattataac |
740 |
Q |
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| T |
55508447 |
gtgtttctgggttgggaacacgaaatctgctaaagaatgttctgaaattaagtgtttcttaattac-agtattttattataac |
55508366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 55509026 - 55508775
Alignment:
| Q |
8 |
attttagcttctagatataaagaaaatggatatttaaattttcaaaattcatttttcttagcctgattagcgttctagcttctttacatccataaagata |
107 |
Q |
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| T |
55509026 |
attttagtttttagatataaagaaaatggatatttaaattttcaaaattcatttttcttagcctgattagcgttctagcttctttatatccataaagata |
55508927 |
T |
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| Q |
108 |
atggatagataaacaaatttcatactttatagccttattgatattttagcttccatccat-nnnnnnnnntggttagttaaagcaaaacgtcatttcttt |
206 |
Q |
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| T |
55508926 |
atggatagataaacaaatttcatactttatagccttattgatattttatcttccatccataaaaaaaaaatggttagttaaagcaaaacttcatttcttt |
55508827 |
T |
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| Q |
207 |
tagcctaatcaacattctagtttctatctataaagacaattgatagttaagc |
258 |
Q |
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| T |
55508826 |
tagcctaatcaacattctagtttctatctataaagacaattgatagttaagc |
55508775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 387
Target Start/End: Complemental strand, 55508683 - 55508645
Alignment:
| Q |
349 |
ctcttcctttttagcctacttgatattttagattatctt |
387 |
Q |
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| T |
55508683 |
ctcttcctttttagcctacttgatattttagattatctt |
55508645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 55508757 - 55508701
Alignment:
| Q |
279 |
gaattgtctaattgatattcta-----accatccataaaaatcgtggatagttaagc |
330 |
Q |
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| T |
55508757 |
gaattgtctaattgatattctagcttaaccatccataaaaatcgtggatagttaagc |
55508701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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