View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4432-Insertion-6 (Length: 760)

Name: NF4432-Insertion-6
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4432-Insertion-6
NF4432-Insertion-6
[»] chr3 (22 HSPs)
chr3 (392-579)||(8399965-8400157)
chr3 (122-271)||(8399660-8399809)
chr3 (416-484)||(7179021-7179089)
chr3 (566-638)||(5356726-5356798)
chr3 (567-651)||(5369387-5369472)
chr3 (416-477)||(5375297-5375358)
chr3 (266-313)||(8399839-8399886)
chr3 (419-477)||(5356884-5356942)
chr3 (419-477)||(5363495-5363553)
chr3 (566-640)||(5375137-5375211)
chr3 (416-477)||(5369559-5369620)
chr3 (421-477)||(7034264-7034320)
chr3 (424-462)||(477088-477126)
chr3 (416-462)||(1187638-1187684)
chr3 (431-477)||(7119983-7120029)
chr3 (586-657)||(7178895-7178967)
chr3 (424-463)||(482050-482089)
chr3 (427-462)||(1205400-1205435)
chr3 (427-462)||(1303667-1303702)
chr3 (586-636)||(7119818-7119868)
chr3 (567-636)||(7103213-7103282)
chr3 (428-477)||(7127215-7127264)
[»] chr8 (5 HSPs)
chr8 (566-670)||(30054333-30054444)
chr8 (583-630)||(26291937-26291984)
chr8 (583-630)||(26305194-26305241)
chr8 (583-630)||(26338549-26338596)
chr8 (428-478)||(27700739-27700789)
[»] chr5 (7 HSPs)
chr5 (419-477)||(28092142-28092200)
chr5 (416-477)||(7023081-7023142)
chr5 (425-464)||(25070286-25070325)
chr5 (425-464)||(25128261-25128300)
chr5 (418-477)||(25216976-25217035)
chr5 (418-477)||(25281131-25281190)
chr5 (428-477)||(7975753-7975802)
[»] chr4 (4 HSPs)
chr4 (416-477)||(36590342-36590403)
chr4 (586-650)||(18365179-18365244)
chr4 (586-650)||(36597681-36597746)
chr4 (583-636)||(52187810-52187863)
[»] chr6 (3 HSPs)
chr6 (417-477)||(33839143-33839203)
chr6 (417-476)||(33843059-33843118)
chr6 (424-477)||(7174408-7174461)
[»] chr7 (4 HSPs)
chr7 (583-636)||(32414647-32414700)
chr7 (416-459)||(6849822-6849865)
chr7 (424-458)||(6845249-6845283)
chr7 (571-636)||(30597225-30597290)
[»] scaffold0438 (1 HSPs)
scaffold0438 (583-630)||(6319-6366)
[»] chr1 (1 HSPs)
chr1 (584-635)||(28927456-28927507)
[»] chr2 (1 HSPs)
chr2 (424-466)||(7228394-7228436)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 7e-88; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 392 - 579
Target Start/End: Original strand, 8399965 - 8400157
Alignment:
Q  392 atttcaccttcatagttaaatggaatgatgttaacctttgctgatggtgagttttgaagcaaaaa-----gtccactactccatcaggtataaatgtatt 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||    
T  8399965 atttcaccttcatagttaaatggaatgatgttaacctttgctgatggtgagttttgaagcaaaaattaaagtccactactccatcaggtataaatgtatt 8400064  T
Q  487 tgtgttcatataaaagttagcaccttcattctcattcatgtactcggctctcagttcccggtatataatagaagcaaggggtttcattttgac 579  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8400065 tgtgttcatataaaagttagcaccttcattctcattcatgtacttggctctcagttcctggtatataatagaagcaaggggtttcattttgac 8400157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 122 - 271
Target Start/End: Original strand, 8399660 - 8399809
Alignment:
Q  122 gtcaagacttctacatatcacattcatctagaggcttctgtatcctccatcaccgtgccttcaatgcaaaacccagcatctataactgatattcttgtga 221  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8399660 gtcaagacttctacatatcacattcctctaaaggcttctgtatcctccatcaccgtgccttcaatgcaaaacccagcatctataactgatattcttgtga 8399759  T
Q  222 gtttctaggtctggtttcaactgacaaagtaacaccattgttaagaactc 271  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8399760 gtttctaggtctggtttcaactgaaaaagtaacaccattgttaagaactc 8399809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 416 - 484
Target Start/End: Complemental strand, 7179089 - 7179021
Alignment:
Q  416 atgatgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtataaatgta 484  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  7179089 atgatgttaacctttgctgatggtgagttttgaagcaaaaaatccagtactccatcaagtatagatgta 7179021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 566 - 638
Target Start/End: Complemental strand, 5356798 - 5356726
Alignment:
Q  566 ggtttcattttgacttgcagtgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaacaa 638  Q
    ||||||||||  ||||| |||||||||||||||||||||||||  | |||||||||||| |||||||||||||    
T  5356798 ggtttcatttctacttgtagtgactccaagttacacaaggaagttagtttaaccttgaaaaaatcaggaacaa 5356726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 567 - 651
Target Start/End: Complemental strand, 5369472 - 5369387
Alignment:
Q  567 gtttcattttgacttgcagtgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaac-aaagagagaatctat 651  Q
    |||||||||  ||||| ||||||||||||||||| ||||||| || |||||| ||||| ||||||||||| |||||||||| ||||    
T  5369472 gtttcatttctacttgtagtgactccaagttacataaggaagtgagtttaacattgaacaaatcaggaacaaaagagagaacctat 5369387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 5375358 - 5375297
Alignment:
Q  416 atgatgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    |||||| ||| ||||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  5375358 atgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactccatcaggtat 5375297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 8399839 - 8399886
Alignment:
Q  266 gaactcaaacaaggaggtcattttcattttacaagaccagtacaagat 313  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  8399839 gaactgaaacaaggatgtcattttcattttacaagaccagtacaagat 8399886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 5356942 - 5356884
Alignment:
Q  419 atgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    ||||||| ||||||| | |||||||||||||||||||| ||||||||||||| ||||||    
T  5356942 atgttaatctttgctaacggtgagttttgaagcaaaaattccactactccataaggtat 5356884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 5363553 - 5363495
Alignment:
Q  419 atgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    ||||||| ||||||| | |||||||||||||||||||| |||||||||||| |||||||    
T  5363553 atgttaatctttgctaaaggtgagttttgaagcaaaaattccactactccagcaggtat 5363495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 566 - 640
Target Start/End: Complemental strand, 5375211 - 5375137
Alignment:
Q  566 ggtttcattttgacttgcagtgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaacaaag 640  Q
    ||||||||||  ||||| |||||||||| |||||||||||||  || |||||||||||  |||||||||||||||    
T  5375211 ggtttcatttctacttgtagtgactccaggttacacaaggaattgagtttaaccttgatcaaatcaggaacaaag 5375137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 5369620 - 5369559
Alignment:
Q  416 atgatgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    |||| ||||||||||||| | |||||| ||||||||||||| |||||||||||| |||||||    
T  5369620 atgaagttaacctttgctaacggtgaggtttgaagcaaaaattccactactccaacaggtat 5369559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 421 - 477
Target Start/End: Complemental strand, 7034320 - 7034264
Alignment:
Q  421 gttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| || | |||||||    
T  7034320 gttaacctttgctgagggtgagttttgaagcaaaaagtctactattcgaccaggtat 7034264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 462
Target Start/End: Complemental strand, 477126 - 477088
Alignment:
Q  424 aacctttgctgatggtgagttttgaagcaaaaagtccac 462  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  477126 aacctttgctgagggtgagttttgaagcaaaaagtccac 477088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 416 - 462
Target Start/End: Complemental strand, 1187684 - 1187638
Alignment:
Q  416 atgatgttaacctttgctgatggtgagttttgaagcaaaaagtccac 462  Q
    ||||||| ||||||||| || ||||||||||||||||||||||||||    
T  1187684 atgatgtgaacctttgccgagggtgagttttgaagcaaaaagtccac 1187638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 7120029 - 7119983
Alignment:
Q  431 gctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  7120029 gctgaaggtgagttttgaagcaaaaagtcgactattccatcaggtat 7119983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 657
Target Start/End: Complemental strand, 7178967 - 7178895
Alignment:
Q  586 tgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaac-aaagagagaatctatgaaatg 657  Q
    |||||||| ||||||||||| || || ||||||||||||||||| |||||| || ||||||| ||||| ||||    
T  7178967 tgactccacgttacacaaggtagtgagtttaaccttgaataaattaggaactaaggagagaacctatgcaatg 7178895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 463
Target Start/End: Complemental strand, 482089 - 482050
Alignment:
Q  424 aacctttgctgatggtgagttttgaagcaaaaagtccact 463  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  482089 aacctttgccgatcgtgagttttgaagcaaaaagtccact 482050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 462
Target Start/End: Complemental strand, 1205435 - 1205400
Alignment:
Q  427 ctttgctgatggtgagttttgaagcaaaaagtccac 462  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1205435 ctttgctgagggtgagttttgaagcaaaaagtccac 1205400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 462
Target Start/End: Original strand, 1303667 - 1303702
Alignment:
Q  427 ctttgctgatggtgagttttgaagcaaaaagtccac 462  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1303667 ctttgctgagggtgagttttgaagcaaaaagtccac 1303702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 636
Target Start/End: Complemental strand, 7119868 - 7119818
Alignment:
Q  586 tgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaac 636  Q
    ||||| |||||||||||||||||| |  |||||||| ||||||||||||||    
T  7119868 tgacttcaagttacacaaggaaggtagcttaaccttcaataaatcaggaac 7119818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 636
Target Start/End: Original strand, 7103213 - 7103282
Alignment:
Q  567 gtttcattttgacttgcagtgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaac 636  Q
    ||||||||| ||||  || ||||| |||||||| ||||||| ||||||||||||| || ||||| |||||    
T  7103213 gtttcatttcgactgtcaatgacttcaagttacgcaaggaatggaatttaaccttcaacaaatccggaac 7103282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 477
Target Start/End: Complemental strand, 7127264 - 7127215
Alignment:
Q  428 tttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    ||||| || ||||||||||||||||||||||  |||| ||||||||||||    
T  7127264 tttgcagaaggtgagttttgaagcaaaaagtaaactattccatcaggtat 7127215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 566 - 670
Target Start/End: Original strand, 30054333 - 30054444
Alignment:
Q  566 ggtttcattttgacttgcagtgactccaagttaca---caaggaagggaatttaaccttgaataaatcaggaacaaagagaga----atctatgaaatgc 658  Q
    ||||||||||  ||||| |||||||||||||||||   |||||||| || ||||||||||||||||||||||| |||||||||    || ||||||||||    
T  30054333 ggtttcatttcaacttgtagtgactccaagttacaacacaaggaagagagtttaaccttgaataaatcaggaagaaagagagaacctatatatgaaatgc 30054432  T
Q  659 aaggaaggatga 670  Q
    || |||||||||    
T  30054433 aatgaaggatga 30054444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 630
Target Start/End: Complemental strand, 26291984 - 26291937
Alignment:
Q  583 cagtgactccaagttacacaaggaagggaatttaaccttgaataaatc 630  Q
    |||||||| ||||||||||||||||||||| | |||||| ||||||||    
T  26291984 cagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatc 26291937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 630
Target Start/End: Complemental strand, 26305241 - 26305194
Alignment:
Q  583 cagtgactccaagttacacaaggaagggaatttaaccttgaataaatc 630  Q
    |||||||| ||||||||||||||||||||| | |||||| ||||||||    
T  26305241 cagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatc 26305194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 630
Target Start/End: Complemental strand, 26338596 - 26338549
Alignment:
Q  583 cagtgactccaagttacacaaggaagggaatttaaccttgaataaatc 630  Q
    |||||||| ||||||||||||||||||||| | |||||| ||||||||    
T  26338596 cagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatc 26338549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 27700739 - 27700789
Alignment:
Q  428 tttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtata 478  Q
    |||||||| || |||||||||||||||||||| ||||  ||||||||||||    
T  27700739 tttgctgaaggcgagttttgaagcaaaaagtcaactataccatcaggtata 27700789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 28092200 - 28092142
Alignment:
Q  419 atgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    |||| ||||||||| || ||||||||||||| |||||||||||||| ||||||||||||    
T  28092200 atgtcaacctttgccgagggtgagttttgaatcaaaaagtccactattccatcaggtat 28092142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 7023142 - 7023081
Alignment:
Q  416 atgatgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    |||||||  ||||||||||| ||||| ||| ||||||||||||| |||| ||||||||||||    
T  7023142 atgatgtcgacctttgctgagggtgactttcgaagcaaaaagtcaactattccatcaggtat 7023081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 25070325 - 25070286
Alignment:
Q  425 acctttgctgatggtgagttttgaagcaaaaagtccacta 464  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  25070325 acctttgctgatggtgcattttgaagcaaaaagtccacta 25070286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 25128300 - 25128261
Alignment:
Q  425 acctttgctgatggtgagttttgaagcaaaaagtccacta 464  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  25128300 acctttgctgatggtgcattttgaagcaaaaagtccacta 25128261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 477
Target Start/End: Complemental strand, 25217035 - 25216976
Alignment:
Q  418 gatgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    ||||| |||||||||||||||||  |||||||||||||| ||||||| ||| | ||||||    
T  25217035 gatgtcaacctttgctgatggtgcattttgaagcaaaaattccactaatcccttaggtat 25216976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 477
Target Start/End: Complemental strand, 25281190 - 25281131
Alignment:
Q  418 gatgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    ||||| |||||||||||||||||  |||||||||||||| ||||||| ||| | ||||||    
T  25281190 gatgtcaacctttgctgatggtgcattttgaagcaaaaattccactaatcccttaggtat 25281131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 7975753 - 7975802
Alignment:
Q  428 tttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    ||||| || ||||| ||||||||||| |||||||||| ||||||||||||    
T  7975753 tttgccgaaggtgaattttgaagcaagaagtccactattccatcaggtat 7975802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 36590342 - 36590403
Alignment:
Q  416 atgatgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    ||||||| ||| | |||||| ||||||||||||| |||||||||||||| ||||||||||||    
T  36590342 atgatgtcaacttctgctgacggtgagttttgaatcaaaaagtccactattccatcaggtat 36590403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 650
Target Start/End: Complemental strand, 18365244 - 18365179
Alignment:
Q  586 tgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaacaaa-gagagaatcta 650  Q
    ||||| |||||||||||| |||| ||| |||||||  ||||||||||||||||| |||||||||||    
T  18365244 tgacttcaagttacacaaagaagtgaacttaacctccaataaatcaggaacaaaggagagaatcta 18365179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 650
Target Start/End: Original strand, 36597681 - 36597746
Alignment:
Q  586 tgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaacaaa-gagagaatcta 650  Q
    ||||| |||||||||||| |||| ||| |||||||  ||||||||||||||||| |||||||||||    
T  36597681 tgacttcaagttacacaaagaagtgaacttaacctccaataaatcaggaacaaaggagagaatcta 36597746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 636
Target Start/End: Complemental strand, 52187863 - 52187810
Alignment:
Q  583 cagtgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaac 636  Q
    |||||||| |||| ||||||||||| |||| | |||||| ||||||||||||||    
T  52187863 cagtgacttcaaggtacacaaggaatggaactcaaccttcaataaatcaggaac 52187810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 33839143 - 33839203
Alignment:
Q  417 tgatgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    ||||||| || || ||||| ||||||||||||||||| |||||||||| ||||||||||||    
T  33839143 tgatgttgactttggctgacggtgagttttgaagcaagaagtccactattccatcaggtat 33839203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 417 - 476
Target Start/End: Original strand, 33843059 - 33843118
Alignment:
Q  417 tgatgttaacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggta 476  Q
    |||||||||| || || || ||||||||||||||||| |||||||||| |||||||||||    
T  33843059 tgatgttaactttggcagacggtgagttttgaagcaagaagtccactattccatcaggta 33843118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 7174408 - 7174461
Alignment:
Q  424 aacctttgctgatggtgagttttgaagcaaaaagtccactactccatcaggtat 477  Q
    |||||||||||| |||||||||||||| ||||| |||| || ||||||| ||||    
T  7174408 aacctttgctgacggtgagttttgaaggaaaaattccaatattccatcatgtat 7174461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 636
Target Start/End: Complemental strand, 32414700 - 32414647
Alignment:
Q  583 cagtgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaac 636  Q
    |||||||| |||||||||||||||||| || || ||||| ||||||||||||||    
T  32414700 cagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaac 32414647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 459
Target Start/End: Complemental strand, 6849865 - 6849822
Alignment:
Q  416 atgatgttaacctttgctgatggtgagttttgaagcaaaaagtc 459  Q
    ||||| || ||||||||||| |||||||||||||||||||||||    
T  6849865 atgattttgacctttgctgagggtgagttttgaagcaaaaagtc 6849822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 6845283 - 6845249
Alignment:
Q  424 aacctttgctgatggtgagttttgaagcaaaaagt 458  Q
    |||||||||||| ||||||||||||||||||||||    
T  6845283 aacctttgctgagggtgagttttgaagcaaaaagt 6845249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 636
Target Start/End: Original strand, 30597225 - 30597290
Alignment:
Q  571 cattttgacttgcagtgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaac 636  Q
    |||||| ||||  ||| ||| |||||||||||||||| |||| | |||||| ||||||||||||||    
T  30597225 cattttcactttaagtaacttcaagttacacaaggaatggaactcaaccttcaataaatcaggaac 30597290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 630
Target Start/End: Complemental strand, 6366 - 6319
Alignment:
Q  583 cagtgactccaagttacacaaggaagggaatttaaccttgaataaatc 630  Q
    |||||||| ||||||||||||||||||||| | |||||| ||||||||    
T  6366 cagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatc 6319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 635
Target Start/End: Original strand, 28927456 - 28927507
Alignment:
Q  584 agtgactccaagttacacaaggaagggaatttaaccttgaataaatcaggaa 635  Q
    ||||||| ||| |||||||||||| |||| | ||||||||||||||||||||    
T  28927456 agtgacttcaatttacacaaggaatggaactcaaccttgaataaatcaggaa 28927507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 7228436 - 7228394
Alignment:
Q  424 aacctttgctgatggtgagttttgaagcaaaaagtccactact 466  Q
    ||||||||| |||||||  ||||||||||||||||||||||||    
T  7228436 aacctttgccgatggtgcattttgaagcaaaaagtccactact 7228394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University