View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432-Insertion-9 (Length: 713)
Name: NF4432-Insertion-9
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 37 - 713
Target Start/End: Original strand, 23032449 - 23033124
Alignment:
| Q |
37 |
acataaacagtgttgacatgtttgtgtttgtgttgtatcaggtgtttgtgtcgaagtcagtgcttcgtaggataatagtgaggaaaatctaagtcttaca |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23032449 |
acataaacagtgttgacatgtttgtgtttgtgttgtatcaggtgtttgtgtcgaagtcagtgcttcgtaggataatagtgaggaaaatctaagtcttaca |
23032548 |
T |
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| Q |
137 |
ttaaaaagagataaagtctgaacaaagtttacaaaggacactcgtcaccttataaaccgatttggcaggattgagttaagcacaacccaacttctaagat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23032549 |
ttaaaaagagataaagtctgaacaaagtttacaaaggacactcgtcaccttataaaccgatttggcaggattgagttaagcacaacccaacttctaagat |
23032648 |
T |
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| Q |
237 |
agtatagaacctatccatcgggccctccaacacattatccacgtaccaagccaaattatggtatatgtgtaaggggtatatagggaaccaagtcacactt |
336 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23032649 |
agtatagaacctatccatcgggccatccaacacattatccacgtaccaagccaaattatggtatatgtgtaaggggtgtatagggaaccaagtcacactt |
23032748 |
T |
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| Q |
337 |
tgaacatagataaacaagggcaactctcacatctcataaaccgggtttgtaggattgagttaagcccatctaaaattttaagtgataacaagtttaccaa |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23032749 |
tgaacatagataaacaagggcaactctcacatctcataaaccgggtttgtaggattgagttaagcccatctaaaattttaagtgataacaagtttaccaa |
23032848 |
T |
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| Q |
437 |
caaagatggtggtctaaatgaaaaaaccactttttgtaaacaataccttatatatgaagtaattgtttgagtaaatattagcagaattatggcagccata |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23032849 |
caaagatggtggtctaaatgaaaaaaccactttttgtaaacaataccttatatatgaagtaattgtttgagtaaatattagcagaattatggcagccata |
23032948 |
T |
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| Q |
537 |
gtcaaatttacctgagttcttcccttcctggttgctatatgcagcgctgtattacccttattatcaaccatatttattgttgatggatctgcttttatca |
636 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23032949 |
gtcaaatttacctgagttcttcccttcctggttgctatatgcagcgctgtattacccttattatcaaccatgtttattgttgatggatctgcttttatca |
23033048 |
T |
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| Q |
637 |
actcctctaccaccgcaaagactctgtcccttcaccgccatgtgaagcgccgtctgtccctttttatcagtccttgt |
713 |
Q |
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| T |
23033049 |
actcctctaccaccac-aagactctgtcccttcaccgccatgtgaagcgccgtctgtccctttttatcagtccttgt |
23033124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 541 - 713
Target Start/End: Original strand, 41065924 - 41066095
Alignment:
| Q |
541 |
aatttacctgagttcttcccttcctggttgctatatgcagcgctgtattacccttattatcaaccatatttattgttgatggatctgcttttatcaactc |
640 |
Q |
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|||||||| ||||||| | ||||||||||||||||||| | ||| || || |||||||||||||| ||||||||||| |||||||||||||||| ||| |
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| T |
41065924 |
aatttacccgagttctggctttcctggttgctatatgcaatgttgtgtttcctttattatcaaccatgtttattgttgaaggatctgcttttatcagctc |
41066023 |
T |
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| Q |
641 |
ctctaccaccgcaaagactctgtcccttcaccgccatgtgaagcgccgtctgtccctttttatcagtccttgt |
713 |
Q |
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|| || ||| | |||| | |||||||| || ||||||||||| || ||||| ||||| |||||||||||||| |
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| T |
41066024 |
ttccactacctc-aagattttgtccctttactgccatgtgaagtgctgtctggcccttcttatcagtccttgt |
41066095 |
T |
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