View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4432_high_11 (Length: 248)
Name: NF4432_high_11
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25740293 - 25740526
Alignment:
| Q |
1 |
agtaatataacttgtcgcggtgtttttactgtgactgattatgttgacatgttgtctgcagttatttgttggttttggatcgcacaaactggaagacaaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25740293 |
agtaagataacttgtcgcggtgtttttactgtgactgattatgttaacatgttgtctgcagttatttgttggttttggatcgcacaaactggaagacaaa |
25740392 |
T |
|
| Q |
101 |
cattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttctatgtcctcaggtgatttatctttcacgctttgatgttatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
25740393 |
cattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttcaatgtaatcaggtgatttaactttcacgctttgatgttatca |
25740492 |
T |
|
| Q |
201 |
aatttgtaccttcatttttgtctaatattattct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25740493 |
aatttgtaccttcatttttgtctaatattattct |
25740526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 25744026 - 25744226
Alignment:
| Q |
34 |
actgattatgttgacatgttgtctgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacatttt |
133 |
Q |
| |
|
|||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25744026 |
actgattatgttaatatgttctctgcagatatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacatttt |
25744125 |
T |
|
| Q |
134 |
cttcagcttgccttcttttgttttctatgtcctcaggtgatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattc |
233 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25744126 |
cttcagcttgccttcttttgttttcaatgtaatcaggtgatttaactttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattc |
25744225 |
T |
|
| Q |
234 |
t |
234 |
Q |
| |
|
| |
|
|
| T |
25744226 |
t |
25744226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 17383269 - 17383428
Alignment:
| Q |
72 |
gttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttctatgtcctcaggt |
171 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||| ||| || |
|
|
| T |
17383269 |
gttttggatcgcacaaattggaaggtaaacattcttacatcactactcattccatacattatcttcagcttgctttctatagttttctatgtcatcaagt |
17383368 |
T |
|
| Q |
172 |
gatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattatt |
232 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
17383369 |
gatttgtctttcacac-ttgatattatcaaatatgtaccttcatttttgtcacatattatt |
17383428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 8534851 - 8535015
Alignment:
| Q |
68 |
gttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttctatgtcctc |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| || |
|
|
| T |
8534851 |
gttggttttggatcgcacaaactggaagacaaac-ttcttacatcactactcattccatacattttcttcagcttgatttctatagttttctatgtcatc |
8534949 |
T |
|
| Q |
168 |
aggtgatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattct |
234 |
Q |
| |
|
|| |||||| |||||||| | ||||| ||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
8534950 |
agatgatttgtctttcacac-ttgatattatcaaatatgcaccttcatttttgtctcatattattct |
8535015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 36450074 - 36450133
Alignment:
| Q |
68 |
gttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccata |
127 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36450074 |
gttggttttggatcgcacatactggaagacaaacattcttacatcactactcattccata |
36450133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 12510035 - 12510115
Alignment:
| Q |
56 |
ctgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttctt |
136 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
12510035 |
ctgcagttatttgttgattttggatcgtacaaactggaagaccaacattttcacatcactactcattccctacattttctt |
12510115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 12513869 - 12513960
Alignment:
| Q |
57 |
tgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttc |
148 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||| |||| |||| | | |||||||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
12513869 |
tgcagttatctgttgagtttggatcgtacaaactgggagaccaacactttcacatcactactcgttccatacatttttttcagcctgccttc |
12513960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University