View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432_high_14 (Length: 235)
Name: NF4432_high_14
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_high_14 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 46359823 - 46360046
Alignment:
| Q |
18 |
atacactcattgttggatattgcgagctagagaaatttgatggtgctctcgagttat------tgactcagatgaaggattttggtgtctcccacaccaa |
111 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46359823 |
atacactcattgttggatattgcaagctagagaaatttgatggtgctctcgagttatatatattgactcagatgaaggattttggtgtctcccacaccaa |
46359922 |
T |
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| Q |
112 |
tcttgatgaatatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggatata |
211 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46359923 |
tcttgatgaatatcacaagttgatccacaatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggatata |
46360022 |
T |
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| Q |
212 |
tagggaagtggcaataacgcagat |
235 |
Q |
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|||||||||||||||||||||||| |
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| T |
46360023 |
tagggaagtggcaataacgcagat |
46360046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 44461024 - 44461237
Alignment:
| Q |
18 |
atacactcattgttggatattgcgagctagagaaatttgatggtgctctcgagttattgactcagatgaaggattttggtgtctcccacaccaatcttga |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461024 |
atacactcattgttggatattgcaagctagagaaatttgatggtgctctcgagttattgactcagatgaaggattttggtgtctcccacaccaatcttga |
44461123 |
T |
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| Q |
118 |
tgaatatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggatatataggga |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
44461124 |
tgaatatcacaagttgatccactatcttcgcttgatggatatggattgcaaaatggcaagggagcagctagaggaaatggagcccatgg----ataggga |
44461219 |
T |
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| Q |
218 |
agtggcaataacgcagat |
235 |
Q |
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|||||||||||||||||| |
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| T |
44461220 |
agtggcaataacgcagat |
44461237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 44468557 - 44468770
Alignment:
| Q |
18 |
atacactcattgttggatattgcgagctagagaaatttgatggtgctctcgagttattgactcagatgaaggattttggtgtctcccacaccaatcttga |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44468557 |
atacactcattgttggatattgcaagctagagaaatttgatggtgctctcgagttattgactcagatgaaggattttggtgtctcccacaccaatcttga |
44468656 |
T |
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| Q |
118 |
tgaatatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggatatataggga |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
44468657 |
tgaatatcacaagttgatccactatcttcgcttgatggatatggattgcaaaatggcaagggagcagctagaggaaatggagcccatgg----ataggga |
44468752 |
T |
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| Q |
218 |
agtggcaataacgcagat |
235 |
Q |
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|||||||||||||||||| |
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| T |
44468753 |
agtggcaataacgcagat |
44468770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 34501671 - 34501480
Alignment:
| Q |
18 |
atacactcattgttggatattgcgagctagagaaatttgatggtgctctcgagttattgactcagatgaaggattttggtgtctcccacaccaatcttga |
117 |
Q |
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|||| ||||||| |||||||||| |||| ||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
34501671 |
atacgctcattgctggatattgcaggctacagaaatttgatatcgctctcaagtcattgactcggatgaaggattttggtgtctcccacataaatcttga |
34501572 |
T |
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| Q |
118 |
tgaatatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggata |
209 |
Q |
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||||||||| |||||||||||| |||| |||||||| |||||| |||||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
34501571 |
tgaatatcagaagttgatccactctctttccttgatggccatggatataaaaatggcaagagaacagttagaggaaatggagcctatggata |
34501480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 38604372 - 38604184
Alignment:
| Q |
21 |
cactcattgttggatattgcgagctagagaaatttgatggtgctctcgagttattgactcagatgaaggattttggtgtctcccacaccaatcttgatga |
120 |
Q |
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|||||||||||||||||||| ||||| | || |||||| |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
38604372 |
cactcattgttggatattgcaagctacataattttgataaggctctcaagttattgactcagatgaagaattttggtgtctcctgcaccaatcttgatga |
38604273 |
T |
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| Q |
121 |
atatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggata |
209 |
Q |
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| ||||||||| |||||| |||| |||||| || ||||||| | |||||| ||| || ||||||||||||||||||||| ||||||| |
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| T |
38604272 |
acttcacaagttaatccactctctttgcttgaaggctatggataggaaaatgacaatagtgcagctagaggaaatggagcctatggata |
38604184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 41583996 - 41584177
Alignment:
| Q |
18 |
atacactcattgttggatattgcgagctagagaaatttgatggtgctctcgagttattgactcagatgaaggattttggtgtctcccacaccaatcttga |
117 |
Q |
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|||| ||||||| |||||||||| |||| |||||||||||| |||||| ||||||||| |||||||||| |||||||||||| ||| |||||||| |
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| T |
41583996 |
atacgctcattgatggatattgcaggctacagaaatttgatgaggctctcaagttattgagctagatgaaggactttggtgtctccttcactaatcttga |
41584095 |
T |
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| Q |
118 |
tgaatatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggag |
199 |
Q |
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| T |
41584096 |
taaatatcgtaagttcttccactctcttcacttgaaggctatgaataggaaaatgtcaagaaagcagctagaggcaatggag |
41584177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 41619849 - 41619941
Alignment:
| Q |
72 |
tattgactcagatgaaggattttggtgtctcccacaccaatcttgatgaatatcacaagttgatccaccatcttcgcttgatggatatggattg |
165 |
Q |
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|||||||||| | |||||||||||||||||| | ||||||||| |||||||||||| | |||| ||| ||||||||||| |||| ||||||| |
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| T |
41619849 |
tattgactcaaa-gaaggattttggtgtctctcgcaccaatctggatgaatatcactaattgaaccattttcttcgcttgaaggatttggattg |
41619941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 9160420 - 9160500
Alignment:
| Q |
69 |
agttattgactcagatgaaggattttggtgtctcccacaccaatcttgatgaatatcacaagttgatccaccatcttcgcttga |
152 |
Q |
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| T |
9160420 |
agttattgactgagatgaaggattttggtttctcc---atgaatctttatgaatatcacaagttgatccactctcttcgcttga |
9160500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 9161522 - 9161622
Alignment:
| Q |
109 |
caatcttgatgaatatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggat |
208 |
Q |
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||||||||||||||||||||||||| ||||| |||| ||||| || ||||||| | ||| | ||||||||| || || ||||||||||| |||||| |
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| T |
9161522 |
caatcttgatgaatatcacaagttggtccactctcttttcttgaaggctatggataggaaattaataagagagcacctggaagaaatggagcctatggat |
9161621 |
T |
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| Q |
209 |
a |
209 |
Q |
| |
|
| |
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|
| T |
9161622 |
a |
9161622 |
T |
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