View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432_high_17 (Length: 227)
Name: NF4432_high_17
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45129110 - 45128884
Alignment:
| Q |
1 |
ttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgcaacttacaacatgttcactagagtgtgtaa |
100 |
Q |
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| T |
45129110 |
ttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgcaacttacaacatgttcactagagtgtgtaa |
45129011 |
T |
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| Q |
101 |
ttactctcgttatgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggac |
200 |
Q |
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| T |
45129010 |
ttactctcgttatgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggac |
45128911 |
T |
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| Q |
201 |
aaatatgatgtcactcttgatgtttgc |
227 |
Q |
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| T |
45128910 |
aaatatgatgtcactcttgatgtttgc |
45128884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40280965 - 40280743
Alignment:
| Q |
1 |
ttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgcaacttacaacatgttcactagagtgtgtaa |
100 |
Q |
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| T |
40280965 |
ttctagaatatgccactgacttcaattcaagggctgagttcttctggtctcatggattgatatcagattcaacttacaaaatgttcaccgcaggctgcaa |
40280866 |
T |
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| Q |
101 |
ttactctcgttatgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggac |
200 |
Q |
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| T |
40280865 |
ttattcgcagtatgtaagtgagtactatagaaactccatttccctgctttgttcaaaggtcatgagccaagtaagcagagaaaccagcaagtttgtggac |
40280766 |
T |
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| Q |
201 |
aaatatgatgtcactcttgatgt |
223 |
Q |
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| T |
40280765 |
aaatatgatgttacccttgatgt |
40280743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 6632166 - 6632114
Alignment:
| Q |
174 |
agtaaagaaactagtagatttgtggacaaatatgatgtcactcttgatgtttg |
226 |
Q |
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| T |
6632166 |
agtacagaaacaagcagatttgttgacaagtatgatgtcactcttgatgtttg |
6632114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 6632336 - 6632284
Alignment:
| Q |
4 |
tagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatgga |
56 |
Q |
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| T |
6632336 |
tagaatttgcaacagattttaattcaagagctgagttcttttggtctcatgga |
6632284 |
T |
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