View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4432_low_1 (Length: 630)
Name: NF4432_low_1
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 34442601 - 34442012
Alignment:
| Q |
1 |
aagacatatattagaggaacacagaattaaacactaagttcagagtatatattgctcaatgcttactatttaagagaatgaatgatatgatgtaccttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34442601 |
aagacatatattagaggaacacagaattaaacactaagttcagagtatatattgctcaatgcttactgtttaagagaatgaatgatatgatgtaccttct |
34442502 |
T |
|
| Q |
101 |
tattaatacttgaaaaccatgaaattctgagagttgcagagaaatgagtgaatttgagatccattcaatattaaaatatactactaataattaacaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34442501 |
tattaatacttgaaaaccatgaaattctgagagttgcagagaaatgagtgaatttgagatccattcaatattaaaatatactactaataattaacaaaat |
34442402 |
T |
|
| Q |
201 |
atactgtgcatggtttcacaaaaaaggaggggggccatttaggacaagaatagatagataaaaaagaagaaacatagaataacaatttaccttggaaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34442401 |
atactgtgcatggtttcacaaaaaaggaggggggccatttaggacaagaatagatagataaaaaagaagaaacatagaataacaatttaccttggaaatt |
34442302 |
T |
|
| Q |
301 |
gatgagcttttttattattaatattattattactaagcaagtaatgcaggtgccatgtgggttggaattggaatccacatttcatatcttcactctatag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34442301 |
gatgagcttttttattattaatattattattactaagcaagtaatgcaggtgccatgtgggttggaattggaatccacatttcatatcttcactctatag |
34442202 |
T |
|
| Q |
401 |
agttagcaaacaaaggaatcatggtagaattcaattggtttattgatttatgtgtcagagacaagtccactaggtaggaaaatactactactagttaata |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
34442201 |
agttagcaaacaaaggaatcatggtagaattgaattggtttattgatttatgtgtcagagacaagtccactaggtaggaaaatactactagt------ta |
34442108 |
T |
|
| Q |
501 |
atagtaaccatagtactactgttatatttctactgtctccaaagagnnnnnnntgagttaaaaactatggttgtacttgtaacggttatactagat |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34442107 |
atagtaaccatagtactactgttatatttctactgtctccaaagagaaaaaaatgagttaaaaactatggttgtacttgtaacggttatactagat |
34442012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University