View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432_low_16 (Length: 228)
Name: NF4432_low_16
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 47461971 - 47461779
Alignment:
| Q |
19 |
ccatctatatgaatcatcatgttttcttaaatctaatttctttgacaaccaccatgagaagatgtccattgtgctccgcaagaatagcaaaactcaaact |
118 |
Q |
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| T |
47461971 |
ccatctatatgaatcatcatcttttcttaaatctaatttctttgacaaccaccatgagaagatgtccattgtgctccgcaagaatagcaaaactcaaact |
47461872 |
T |
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| Q |
119 |
tgcacctgcaaacaaacaccgacacttgttcagttacgttattcactaatacaaattaaattgtttctattggaaatatattgcacatttctt |
211 |
Q |
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| T |
47461871 |
tgcacctgcaaacaaacaccgacacttgttcagttacgttattcactaatacaaattaaattgtttctattgcaaatatattgcacatttctt |
47461779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 47468886 - 47468797
Alignment:
| Q |
49 |
atctaatttctttgacaaccaccatgagaagatgtccattgtgctccgcaagaatagcaaaactcaaacttgcacctgcaaacaaacacc |
138 |
Q |
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| T |
47468886 |
atctaatttctttgacaaccaccatgagaagatgtccatcctgcaccacacgcatagcaaaactcaaatttgcacctgcaaacaaacacc |
47468797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 47464768 - 47464682
Alignment:
| Q |
52 |
taatttctttgacaaccaccatgagaagatgtccattgtgctccgcaagaatagcaaaactcaaacttgcacctgcaaacaaacacc |
138 |
Q |
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| T |
47464768 |
taatttctttgacaaccacggtgagaagatgttgattgtgctccgcgagcatagcaaaactgaaatttgcacctgcaaacaaacacc |
47464682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 47456132 - 47456058
Alignment:
| Q |
64 |
caaccaccatgagaagatgtccattgtgctccgcaagaatagcaaaactcaaacttgcacctgcaaacaaacacc |
138 |
Q |
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| T |
47456132 |
caaccaccatgagtagaagtccattgttctccacaagcatagcaaaactcaaaccggcacctgcaaacaaacacc |
47456058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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