View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432_low_19 (Length: 227)
Name: NF4432_low_19
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 45129452 - 45129232
Alignment:
| Q |
7 |
caagggacaatcttgtattcttggaacgttggttcaacaagtttcctcaatatagaaacagagatttgtttctaactggtgaaagttatgcaggtaaact |
106 |
Q |
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| T |
45129452 |
caagggacaatcttgtattcttggaacgttggttcaacaagtttcctcaatatagaaacagagatttgtttctaactggtgaaagttatgcaggtaaact |
45129353 |
T |
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| Q |
107 |
tgtcacctttactgctttttgaaacatgttacatcaatcattactaattaataaaatttatgcatgtatttcaggtcattatgttcctcaacttgcaaag |
206 |
Q |
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| T |
45129352 |
tgtcacctttactgctttttgaaacatgttacatcaatcattactaattaataaaatttatgcatgtatttcaggtcattatgttcctcaacttgcaaag |
45129253 |
T |
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| Q |
207 |
cttatgattgaaatgaacaaa |
227 |
Q |
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| T |
45129252 |
cttatgattgaaatgaacaaa |
45129232 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 40281539 - 40281445
Alignment:
| Q |
9 |
agggacaatcttgtattcttggaacgttggttcaacaagtttcctcaatatagaaacagagatttgtttctaactggtgaaagttatgcaggtaa |
103 |
Q |
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| T |
40281539 |
agggacaaccttgtgttcttgctacattggttcaacaagttcccccaatacaaacacacagatttgtttttgacaggagaaagttatgcaggtaa |
40281445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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