View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4432_low_3 (Length: 568)
Name: NF4432_low_3
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_low_3 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 560
Target Start/End: Original strand, 35676000 - 35676534
Alignment:
| Q |
19 |
gtgatatgtaggggtcaagattccaagtaacactctagttgatcgttttcattgataaatgcatcatctacctgaggttcatctaaagataaaccctcta |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
35676000 |
gtgatatgtaggggtcaagattcgaagtaacactctagttgatcgttttcattgataaatgcatcatctagctcaggttcatctaaagataaaccctcta |
35676099 |
T |
|
| Q |
119 |
attgatcatcatcatcagcaggtttcttcgnnnnnnncttctttatttcaaattaatctatacacacacaaacacttctcctccccctatatcattatcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35676100 |
attgatcatcatcatcagcaggtttcttcgtttttttcttctttatttcaaattaatctatacacacacaaacacttctcctccccctatatcattatcc |
35676199 |
T |
|
| Q |
219 |
aaatttatatttgcttacatatatgaagaatttaacggtatatttaactgtgcaagttgcaatgttatcggaaaaaacagtacatgcaacgtgacttgtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35676200 |
aaatttatatttgcttacatatatgaagaatttaacggtatatgcaactgtgcaagttgcaatgttatcggaaaaaacagtacatgcaacgtgacttgtt |
35676299 |
T |
|
| Q |
319 |
ctcattgtatgctttgattttcaccttatcattattcattattagtacaatcatttagtcaccataattaaatataatatagaggaagatatgagaagaa |
418 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
35676300 |
ctcatcgtatgctttgattttcaccttatcattattcattattagtacaatcatttagtcacca----taaatataatatagaggaagatatg---agaa |
35676392 |
T |
|
| Q |
419 |
gaaccataaacatcgaccaagtgatatatcacgaagagattggtttttatcatctgcactcaatagaaaccaaagcttaagccatgtccacatttctaca |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35676393 |
gaaccataaacatcgaccaagtgatatatcacgaagagattggtttttatcatctgcactcaatagaaaccaaagcttaagccatgtccacatttctaca |
35676492 |
T |
|
| Q |
519 |
aagttttctttcacatgaaatcttctcttcattccctatgct |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35676493 |
aagttttctttcacatgaaatcttctcttcattccctatgct |
35676534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 477 - 560
Target Start/End: Original strand, 35655383 - 35655466
Alignment:
| Q |
477 |
ctcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
560 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35655383 |
ctcaacagaaaccaaaggttaagccatgtccacctttctacacagttctctttcacaggaaatcttctcttcattccctatgct |
35655466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 560
Target Start/End: Original strand, 35645953 - 35646038
Alignment:
| Q |
475 |
cactcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
560 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35645953 |
cactcaacaaaaaccaaagcttaagccatgtccaccattctgccaagttctctttcacatgaaatcttctcttcattccgtatgct |
35646038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 486 - 560
Target Start/End: Original strand, 35672949 - 35673025
Alignment:
| Q |
486 |
aaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttc--tcttcattccctatgct |
560 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| || |||||| ||||||| ||| | ||||||||||||||| |
|
|
| T |
35672949 |
aaccaaaggttaagccatgtccacctttctacaaaattctctttcgcatgaaagtttctatattcattccctatgct |
35673025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 490 - 560
Target Start/End: Original strand, 4203 - 4273
Alignment:
| Q |
490 |
aaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
560 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| |||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
4203 |
aaagcttaagccatgtccacctttctacaatgttctctttcgcatgaaagcttctattcattccctatgct |
4273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University