View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432_low_4 (Length: 548)
Name: NF4432_low_4
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 346 - 538
Target Start/End: Complemental strand, 31402687 - 31402498
Alignment:
| Q |
346 |
tttaagtcaaatatactcttgacattgaagaagtgcttcgacaagaaaagtccacacgttgaatatatgatagtattgcattttcttgacttcattggca |
445 |
Q |
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| T |
31402687 |
tttaagtcaaatatactcttcacattgaagaagtgcttcgacaagaaaagtccacacgttgaatatatgata---ttgcattttcttgacttcattggca |
31402591 |
T |
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| Q |
446 |
attaatcttcaagatttttaaacactgggttgaaactttttacttaaaacataaaactctgcaattgagttccaaatattttctgttgttcat |
538 |
Q |
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| T |
31402590 |
attaatcttcaagatttttaaacactgggttgaaactttttacttaaaacataaaactctgcaattgagttccaaatattttttgttgttcat |
31402498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 31402746 - 31402689
Alignment:
| Q |
16 |
ctttatacacagattattgatctgctagcaccctccctttacatagtctggcttccct |
73 |
Q |
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| T |
31402746 |
ctttatacacagattattgatctgctagcaccctccctttacatagtctggcttccct |
31402689 |
T |
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