View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4432_low_5 (Length: 417)
Name: NF4432_low_5
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 36 - 399
Target Start/End: Original strand, 40508492 - 40508855
Alignment:
| Q |
36 |
acaggcgcattatttttaacttgtgtaacnnnnnnnnnagatagacaaaatgataaataactattaaaactcacatatataagtaaatggacaagggttc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40508492 |
acaggcgcattatttttaacttgtgtaacttattttttagatagacaaaatgataaataactattaaaactcacatatataagtaaatggacaagggttc |
40508591 |
T |
|
| Q |
136 |
gaaccttcatcatatcgtgcaacctaacaatttcgacacttttaccagttggcctagaatttgtagacgctcatagaaaatatgaggcatgaacttatag |
235 |
Q |
| |
|
|||||||||||| | ||| || |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40508592 |
gaaccttcatcacaacgttcagcctaacaatttcgacacttttatcagttggtctagaacttgtagacgctcatagaaaatatgaggcatgaacttatag |
40508691 |
T |
|
| Q |
236 |
tttaaccacttaaacttaactaattggtcatgtataattaaattatttgatttttatgtagaaattaattcagagagtttgtaaaaagattaatatataa |
335 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40508692 |
tttaaccacttaaacttaagtaattggtcatgtataattaaattatttgatttttatgtagaaattaattcagagagtttgtaaaaagattaatatataa |
40508791 |
T |
|
| Q |
336 |
aagttcnnnnnnnnattgaatagcaaataaagtatgttaaaaagatgtatagggggtgaatatt |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40508792 |
aagttcttttttttattgaatagcaaataaagtatgttaaaaagatgtatagggggtgaatatt |
40508855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 40475580 - 40475617
Alignment:
| Q |
253 |
aactaattggtcatgtataattaaattatttgattttt |
290 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40475580 |
aactatttggtcatgtataattaaattatttgattttt |
40475617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 40507926 - 40507963
Alignment:
| Q |
253 |
aactaattggtcatgtataattaaattatttgattttt |
290 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40507926 |
aactatttggtcatgtataattaaattatttgattttt |
40507963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 40508443 - 40508472
Alignment:
| Q |
4 |
agaccacaacattgaaagattaaattccaa |
33 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40508443 |
agaccacaacattgaaagattaaattccaa |
40508472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 10030090 - 10030052
Alignment:
| Q |
74 |
agatagacaaaatgataaataactattaaaactcacata |
112 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
10030090 |
agatagacaaaatgacaaataattattaaaactcacata |
10030052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 17654557 - 17654591
Alignment:
| Q |
88 |
ataaataactattaaaactcacatatataagtaaa |
122 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17654557 |
ataaataactattaaaactcacatacataagtaaa |
17654591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University