View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432_low_6 (Length: 384)
Name: NF4432_low_6
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 39900980 - 39901315
Alignment:
| Q |
18 |
atctcgaaagcttaggaagtgtctggccacctaacctactacaaagcaaaactgatataattaactttgagcagctgcgtaacttttctaatgatacgtt |
117 |
Q |
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| T |
39900980 |
atctcgaaagcttaggaagtgtctggccacctaacctactacaaagcaaaactgatataattaac------------------ttttctaatgatacggc |
39901061 |
T |
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| Q |
118 |
atccattttatttaacactgtaatataatataataatgagtgtgctaaagaacagtaaaaataatcagagaatgaatgatagtctcttcctatgaagcag |
217 |
Q |
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| T |
39901062 |
atccattttatttaacactgtaatataatataataatgagtgtgctaaagaacagtaaaaataatcagagaatgaatgatagtctcttcctatgaagcag |
39901161 |
T |
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| Q |
218 |
ggaaatgagagagtgaatttaatcatcaaagtgccataataataaggggaatataaatgatgatgaatatgaacatgaaacgtgcggtcatcatgaacca |
317 |
Q |
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| T |
39901162 |
ggaaatgagagagtgaatttaatcatcaaagtgccataataataaggggaatataaatgatgatgaatatgaacatgaaacgtgcggtcatcatgaacca |
39901261 |
T |
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| Q |
318 |
atgaaacgatcactctttaattgtcagacatatcttaccctttcccttcatttca |
372 |
Q |
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| T |
39901262 |
atgaaacgatcactctttaattgtcagacatatcttacccttt-ccttcatttca |
39901315 |
T |
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