View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4432_low_8 (Length: 333)
Name: NF4432_low_8
Description: NF4432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4432_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 45873547 - 45873850
Alignment:
| Q |
19 |
acagtccacctcccaactagtgttaaagctaaaatatagaaaggggtaaaaatatagcaggaaccaaaatagcattggcagtacactagaacccaacaaa |
118 |
Q |
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| T |
45873547 |
acagtccacctcccaactagtgctaaagctaaaatatagaaaggggtaaaaatatagcaggaaccaaaatagcattggcagtacactagaacccaacaaa |
45873646 |
T |
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| Q |
119 |
gcatactattgcttcaaacactagctcccaaactaaagaacaggcgctgacattacatagtagtacactagaaaaaataaaccaaagccaactaaaatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45873647 |
gcatactattgcttcaaacactagctcccaaactaaagaacaggcgctgacattacatagtagtacaccagaaaaaataaaccaaagccaactaaaatca |
45873746 |
T |
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| Q |
219 |
attaacaccaaaggccactaacagaagaaaaacatcaaatgctcagatggtttattattaatagcattgacccttttcaaactcttcttcttcgtaactt |
318 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45873747 |
attaacaccaacggccactaacagaagaaaaacatcaaatactcagatggtttattattaatagcattgacccttttcaaactcttcttcttcgtaactt |
45873846 |
T |
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| Q |
319 |
tctt |
322 |
Q |
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|||| |
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| T |
45873847 |
tctt |
45873850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 48969921 - 48969975
Alignment:
| Q |
257 |
atgctcagatggtttattattaatagcattgacccttttcaaactcttcttcttc |
311 |
Q |
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| T |
48969921 |
atgctcagatggtttattattgatagcattgacccttttcaaactcttcttcttc |
48969975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 22875936 - 22875861
Alignment:
| Q |
63 |
ggtaaaaatatagcaggaaccaaaatagcattggcagtacactagaacccaacaaagcatactattgcttcaaaca |
138 |
Q |
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| T |
22875936 |
ggtaaaaaaataacagcaaccaaaaaaactttggcagtacactaaaacccaaccaagcatactattgcttcaaaca |
22875861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 41006386 - 41006438
Alignment:
| Q |
63 |
ggtaaaaatatagcaggaaccaaaatagcattggcagtacactagaacccaac |
115 |
Q |
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|||||||||||||||| |||||||| ||| ||| ||||||||| |||||||| |
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| T |
41006386 |
ggtaaaaatatagcagcaaccaaaaaagctttgatagtacactataacccaac |
41006438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 11640887 - 11640949
Alignment:
| Q |
63 |
ggtaaaaatatagcaggaaccaaaatagcattggcagtacactagaacccaacaaagcatact |
125 |
Q |
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|||||||||||||||| |||||||| ||| |||||||||||||| || | ||| ||||||||| |
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| T |
11640887 |
ggtaaaaatatagcagcaaccaaaaaagctttggcagtacactaaaatctaaccaagcatact |
11640949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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