View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4433-Insertion-1 (Length: 1011)
Name: NF4433-Insertion-1
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4433-Insertion-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 908; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 908; E-Value: 0
Query Start/End: Original strand, 7 - 1011
Target Start/End: Original strand, 47523997 - 47525002
Alignment:
| Q |
7 |
accgatcctacataggatctcgatcctgactacattcgtgaagatggttatacattctgacattggattcaacttcagtagtaagtgctattattgcctc |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47523997 |
accgatcctacataggatctcgatcctgactacattcgtgaagatggttatacattctgacattggattcaacttcagtagtaagtgctattatttcctc |
47524096 |
T |
|
| Q |
107 |
tgtcttcatcatcatcagggccaggccaaggtttcatctgttctgcagaattacgtaccggttgtagcagcagcagtaggcgctttgttggtctagtctc |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47524097 |
tgtcttcatcatcatcagggccaggccaaggtttcatctgttctgcagaattaggtaccggttgtagcagcagcggtaggcgctttgttggtctagtctc |
47524196 |
T |
|
| Q |
207 |
cggttcttttgcagcacatgtagagtctctttgtttgtatattgtcagaaacaggtgtatgttattcaagtgctctcatatgtgcatcttttatgtgtga |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47524197 |
cggttcttttgcagcacatgtagagtctctttgtttgtatattgtcagaaacaggtgtatgttattcaagtgctctcatatgtgcatcttttatgtgtga |
47524296 |
T |
|
| Q |
307 |
ttgttttaggtgttgttagggctattgcccctcagtctatctaaagtaacgttgtatattcacttgtaggtacctctggtaccttatcttatttcataga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47524297 |
ttgttttaggtgttgttagggctattgcccctcagtctatctaaagtaacgttgtatattcacttgtaggtacctctggtaccttatcttatttcataga |
47524396 |
T |
|
| Q |
407 |
tttaaattctattttgcttcnnnnnnnnnnnnnnnn--ctagaagtttaatgttgctaatattcaaactatgtaaagcaaataagttatagggtaaaatg |
504 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47524397 |
tttaaattctattttgcctcaaaaaaataaaaaataaactagaagtttaatgttgctaatattcaaactatgtaaagcaaataagttatagggtaaaatg |
47524496 |
T |
|
| Q |
505 |
actaaaagtccaaaaagaacagagggaatagctgtcagttgagggtatgtttgagtttttaaagtagtttcgctgcattggccaagtacccttactaaaa |
604 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47524497 |
actaaaagtccaaaaagaacagagggaatagctgtcagttgagggtatgtttgagtttttaaagtagtttcgctgcattggccaagtacccttactaaaa |
47524596 |
T |
|
| Q |
605 |
aatgcaatgcaacagggttgcacatagcgcctagggctgctacgcaacgccgctatagcagctgctactgactacatagataaacacttgtttggtgaaa |
704 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47524597 |
aatgcaatgcaacggggttgcacatagcgcctagggctgctacgcaacgccgctatagcagctgctactgactacatagataaacacttgtttggtgaaa |
47524696 |
T |
|
| Q |
705 |
gttcttttgtttgatagatcggtcttaggtttaacatttgtatagtagaacttgattatggtgcaatgattggtttggttgggtttgaatttttagaatt |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47524697 |
gttcttttgtttgatagatcggtcttaggtttaacatttgtatagtagaacttgataatggtgcaatgattgatttggttgggtttgaatttttagaatt |
47524796 |
T |
|
| Q |
805 |
tggatatttattgttcttgtaatgctgatgacaggtggatatggagcggcagatggaggacctttggcgtggggtctctgttacaatcacgaaatgagtc |
904 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47524797 |
tggttatttattgttcttgtaatgctgatgacaggtggatatggagcggcagatggaggacctttggcgtggggtctctgttacaatcacgaaatgagtc |
47524896 |
T |
|
| Q |
905 |
ctagccagtcatattgtgatgactatttcaaattcacatacccctgtactcctggggctgaatactatgggcgtggagccatttcctatttactggtatg |
1004 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47524897 |
ctagccagtcatattgtgatgactatttcaaattcacatacccctgtactcctggggctgaatactatgggcgtggagcca-ttcctatttactggtatg |
47524995 |
T |
|
| Q |
1005 |
tatactt |
1011 |
Q |
| |
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||||||| |
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| T |
47524996 |
tatactt |
47525002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 7e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 786 - 1008
Target Start/End: Complemental strand, 6895545 - 6895325
Alignment:
| Q |
786 |
ggtttgaatttttagaatttggatatttattgttcttgtaatgctgatgacaggtggatatggagcggcagatggaggacctttggcgtggggtctctgt |
885 |
Q |
| |
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||||| |||||| | | ||||||| |||||||||||||||||||||||| |||||||||| |||| |||| |||||||||||||| |||||||| ||| |
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| T |
6895545 |
ggttttaattttgacactttggatgtttattgttcttgtaatgctgatg-caggtggatacggagtggcaaccggaggacctttggcctggggtctatgt |
6895447 |
T |
|
| Q |
886 |
tacaatcacgaaatgagtcctagccagtcatattgtgatgactatttcaaattcacatacccctgtactcctggggctgaatactatgggcgtggagcca |
985 |
Q |
| |
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|||||||| |||||||||||| |||| |||||||||||||||||| |||||| ||||||||||| |||||||| ||||||||||| || |||||||||| |
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| T |
6895446 |
tacaatcatgaaatgagtcctgcccagacatattgtgatgactattacaaattaacatacccctgcactcctggagctgaatactacggacgtggagcca |
6895347 |
T |
|
| Q |
986 |
tttcctatttactggtatgtata |
1008 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
6895346 |
-ttcctatctactggtatgtata |
6895325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 39598888 - 39598853
Alignment:
| Q |
7 |
accgatcctacataggatctcgatcctgactacatt |
42 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39598888 |
accgatcctacataggatctcgatcctgactacatt |
39598853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 7227405 - 7227437
Alignment:
| Q |
10 |
gatcctacataggatctcgatcctgactacatt |
42 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
7227405 |
gatcctacataggatctcgatcctgactacatt |
7227437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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