View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4433-Insertion-2 (Length: 836)
Name: NF4433-Insertion-2
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4433-Insertion-2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 7 - 500
Target Start/End: Complemental strand, 4906888 - 4906395
Alignment:
| Q |
7 |
agtatgtcctaaccaacactttcacagatagatctgacgtttactcctttggtatggttctacttcaagtagcatgcacaaattacaagaataccatctt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4906888 |
agtatgtcctaaccaacactttcacagataaatctgacgtttactcctttggtatggttctacttcaagtagcatgcacaaattacaagaataccatctt |
4906789 |
T |
|
| Q |
107 |
cgataagatgatcatgttagatgacacatattggttttcagaaaagtcatttaatccagctaactttctggagcggttcccagttaatgagattattgat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
4906788 |
cgataagatgatcatgttagatgacacatattggttttcagaaaagtcatttaatccagctaactttttggagaggttcccagctaatgagattattgat |
4906689 |
T |
|
| Q |
207 |
cccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttgaatatagaaccaaatgaaagaccagctatgg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4906688 |
cccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttgaatatagaaccaaatgaaagaccagctatgg |
4906589 |
T |
|
| Q |
307 |
gtgaggttgaggtcgaacttgagcatgctctggaactgcaggaggaagcagattgtggaaaaagtaatgatgatttttacctttttccaagcaccagttc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4906588 |
gtgaggttgaggtcgaacttgagcatgctctggaactgcaggaggaagcagattgtggaaaaagtaatgatgatttttacctttttccaagcaccagttc |
4906489 |
T |
|
| Q |
407 |
tacctaattaaccacggtaagctcccatttgggttgagaataaattttatggatgttgtgcttcctttttggcttgctgctaaatacaattctt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4906488 |
tacctaattaaccacggtaagctcccatttgggctgagaataaattttatggatgttgtgcttcctttttggcttgctgctaaatacaattctt |
4906395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 529 - 836
Target Start/End: Complemental strand, 4906366 - 4906059
Alignment:
| Q |
529 |
tgcatactctccctacgttacattcttgttacgacaagaatttcaattttgattcgacaatggtatagtgtcaaagagaagattaagagttctagtagtg |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4906366 |
tgcatactctccctacgttacattcttgttacgacaagaatttcaattttgattcgacaatggtatagtgtcaaagagaagattaagagttctagtagtg |
4906267 |
T |
|
| Q |
629 |
actatcaaaagctagatcaatgaaggaaaaaatgtcatcgacaatatgtgagcgtcaacaagatgaaggaggagttagatggtgtcggatggatggttcc |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4906266 |
actatcaaaagctagatcaatgaaggaaaaaatgtcatcgacaatatgtgagcgtcgacaagatgaaggaggagttagatggtgtcggatggatggttca |
4906167 |
T |
|
| Q |
729 |
ggatcaagacgaaacacacaaggtcaagaacgacaaatgcaatgcaagactgatatatcttggttgggaaagttatttttcaccccatgagg-atgttcc |
827 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| |
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|
| T |
4906166 |
ggatcaagacgaaacacacaaggtcaagaacgacaaatgcaatgcaagactgatatatcttggtt-ggaaagttatttttcaccccatgaggaatgatcc |
4906068 |
T |
|
| Q |
828 |
taaactgtt |
836 |
Q |
| |
|
||||||||| |
|
|
| T |
4906067 |
taaactgtt |
4906059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 500
Target Start/End: Complemental strand, 4903507 - 4903026
Alignment:
| Q |
11 |
tgtcctaaccaacactttcacagatagatctgacgtttactcctttggtatggttctacttcaagtagcatgcacaaattacaagaataccatcttcgat |
110 |
Q |
| |
|
||||| |||||| || |||||||||| || ||| ||||| || ||||||||||||||| || |||||||| |||||||||| |||||||| ||||| ||| |
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|
| T |
4903507 |
tgtccgaaccaatacattcacagataaatgtgatgtttattcttttggtatggttctaattgaagtagcaggcacaaattataagaatactatctttgat |
4903408 |
T |
|
| Q |
111 |
aagatgatcatgttagatgacacatattggttttcagaaaagtcatttaatccagctaactttctggagcggttcccagttaatgagattattgatccca |
210 |
Q |
| |
|
|||||| |||||||||| ||| | || |||||| ||||||||||| ||||||||||||||| ||||| ||||||| | | || ||||||||||||||| |
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|
| T |
4903407 |
aagatggtcatgttagagaacaaagatcggtttttagaaaagtcatcgaatccagctaactttttggagaggttccctgctgataagattattgatccca |
4903308 |
T |
|
| Q |
211 |
ttctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttgaatatagaaccaaatgaaagaccagctatgggtga |
310 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4903307 |
ttctcatgagattaatagcgccgcaatgtttggcagtgttcatggatatcatgaaaagatgcttgaatatagaaccaaatgaaagaccagctatgggtga |
4903208 |
T |
|
| Q |
311 |
ggttgaggtcgaacttgagcatgctctggaactgcaggaggaagcagattgtggaaaaagtaatgatgatttttacctttttccaagcaccagttctacc |
410 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| || || ||||||| |
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|
| T |
4903207 |
ggttgaggtcgaacttgagcatgctctagcactgcaggaggaagcagattgtgggaaaagtaatggtgatttttaactttttccaaccatcaattctacc |
4903108 |
T |
|
| Q |
411 |
taattaaccacggtaagc-tcccatttgggttgagaataaattttatggatgttgtgcttcctttttggcttgctgctaaatacaattctt |
500 |
Q |
| |
|
|| |||||||| |||||| ||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
4903107 |
tagttaaccactgtaagcttccaatttgggatgagaataaattttatgga--------ttccttttt-gcttgctgctaaatacaattctt |
4903026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 5822752 - 5823104
Alignment:
| Q |
7 |
agtatgtcctaaccaacactttcacagatagatctgacgtttactcctttggtatggttctacttcaagtagcatgcacaaattacaagaataccatctt |
106 |
Q |
| |
|
||||||||| |||||| ||||||||||||| || ||| ||||||||||||||||||||||||||| ||| || ||| ||||| ||||| |||||||||| |
|
|
| T |
5822752 |
agtatgtccgaaccaatactttcacagataaatgtgatgtttactcctttggtatggttctacttgaagcagtatgtacaaactacaaatataccatctt |
5822851 |
T |
|
| Q |
107 |
cgataagatgatcatgttagatgacacatattggttttcagaaaagtcatttaatccagctaactttctggagcggttcccagttaatgagattattgat |
206 |
Q |
| |
|
|||||||||| | | |||||| | || || |||| |||| | | | | |||||| ||| ||||| |||| ||| | |||||||||||||| |
|
|
| T |
5822852 |
tgataagatgaacgtattagataatccaaatatatttttagaacggccgaatgaagtagctaaatttttggagaggtttgcagcttatgagattattgat |
5822951 |
T |
|
| Q |
207 |
cccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttgaatatagaaccaaatgaaagaccagctatgg |
306 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||| |||| |
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|
| T |
5822952 |
cccattctcatgagattgattgcgccgtggtgtttgaaggtgttcatggatgtcatgaaaaaatgcttgaatatagacccaaacgaaagaccagcaatgg |
5823051 |
T |
|
| Q |
307 |
gtgaggttgaggtcgaacttgagcatgctctggaactgcaggaggaagcagat |
359 |
Q |
| |
|
| ||||||||||| ||||| ||||||||||| | ||||||||||||| ||||| |
|
|
| T |
5823052 |
gcgaggttgaggttgaactcgagcatgctctagcactgcaggaggaaacagat |
5823104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 181 - 373
Target Start/End: Original strand, 4923904 - 4924099
Alignment:
| Q |
181 |
ggttcccagttaatgagattattgatcccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttgaata- |
279 |
Q |
| |
|
||||||||| | | || ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
4923904 |
ggttcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttgaatag |
4924003 |
T |
|
| Q |
280 |
--tagaaccaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagcatgctctggaactgcaggaggaagcagattgtggaaaaagtaa |
373 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
4924004 |
tggagaaccaaatgaaagaccaacaatgggtgaggttgaggttgaacttgagcatgctttggcactgcaggaggaagcagatcgtggggaaagtaa |
4924099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 155 - 358
Target Start/End: Original strand, 4929213 - 4929419
Alignment:
| Q |
155 |
atttaatccagctaactttctggagcggttcccagttaatgagattattgatcccattctcatgagattgattgcgccgcaatgtttggaagtgttcatg |
254 |
Q |
| |
|
|||||||||| | ||||||| ||| ||||||||| | |||| ||||||||||| ||||||| |||||||||| | ||| ||||||||| ||||||| | |
|
|
| T |
4929213 |
atttaatccaacctactttctagagaggttcccagctgatgaaattattgatccaattctcacgagattgatttcaccggaatgtttggcagtgttcgtc |
4929312 |
T |
|
| Q |
255 |
gatatcatgaaaagatgcttgaata---tagaaccaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagcatgctctggaactgcaggagg |
351 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
4929313 |
aatatcatgaaaagatgcttgaatagagaagaaccaaatgaaagaccttcaatgggtgaggttgaggttgaacttgagcatgctctagcactgcaggagg |
4929412 |
T |
|
| Q |
352 |
aagcaga |
358 |
Q |
| |
|
||||||| |
|
|
| T |
4929413 |
aagcaga |
4929419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 611 - 697
Target Start/End: Complemental strand, 4902981 - 4902894
Alignment:
| Q |
611 |
ttaagagttctagtagtgactatcaaaagctagatcaatgaaggaaaaa-atgtcatcgacaatatgtgagcgtcaacaagatgaagg |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||| ||||| |||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
4902981 |
ttaagagttctagtagtgactatcaaaagctaaaacaatgaagtaaaaacatgttgtcgacaatatgtgatcgtcgacaagatgaagg |
4902894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 4923820 - 4923867
Alignment:
| Q |
30 |
acagatagatctgacgtttactcctttggtatggttctacttcaagta |
77 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4923820 |
acagataaatctgacgtttactcctttggtatggttctatttcaagta |
4923867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 659
Target Start/End: Complemental strand, 4899306 - 4899240
Alignment:
| Q |
593 |
atagtgtcaaagagaagattaagagttctagtagtgactatcaaaagctagatcaatgaaggaaaaa |
659 |
Q |
| |
|
||||||||||||| |||||||| |||| | ||||||||||||||||| || |||||||||| ||||| |
|
|
| T |
4899306 |
atagtgtcaaagaaaagattaaaagttttggtagtgactatcaaaagttacatcaatgaagtaaaaa |
4899240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 4929022 - 4929071
Alignment:
| Q |
24 |
actttcacagatagatctgacgtttactcctttggtatggttctacttca |
73 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
4929022 |
acttacacagataaatgtgacgtttactcctttggtatggttctacttca |
4929071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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