View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4433-Insertion-3 (Length: 662)
Name: NF4433-Insertion-3
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4433-Insertion-3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 38 - 662
Target Start/End: Original strand, 6939053 - 6939670
Alignment:
| Q |
38 |
tgctgtaacatatctcagccgtccgatctttaatcggtggctgaattgaaatcaaattttgtgaaaatcagataaataaatctgaactgtaaaatcactt |
137 |
Q |
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|||||||||| |||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939053 |
tgctgtaacacatctcagccgtccgatctttaatcggtg-----actgaaatcaaactgtgtgaaaatcagataaataaatctgaactgtaaaatcactt |
6939147 |
T |
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| Q |
138 |
ttctaaggttcaaaccagctactgtgtgaagcatttacagtaggcgatccaggtcctattgtattcaatataaatcaaaagttaacatgtgtgtgcgagt |
237 |
Q |
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||||| |||| ||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6939148 |
ttctatggtttaaatcagctactgtgtgaagcatttacaataggcgatctaggtcctattgtattcaatataaatcaaaagttaacatgtgtgt--gagt |
6939245 |
T |
|
| Q |
238 |
gtttgtacaataataaaatacaaaattattaattacctaaatattggatttccttgaggccacatgaggttaatgaaatcttgatgagtcgtatcatgat |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939246 |
gtttgtacaataataaaatacaaaattattaattacctaaaaattggatttccttgaggccacatgaggttaatgaaatcttgatgagtcgtatcatgat |
6939345 |
T |
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| Q |
338 |
caagatcactatcaatcccaaagctttgagaattgggaatggcatagcttttgttgatgtaacccctgtaaagctttggactaacaaacttctccttggt |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6939346 |
caagatcactatcaatcccaaagctttgagaattgggaatggcatagcttttgttgatgtaacccctgtaaagctttggactaacaaatttctccttggt |
6939445 |
T |
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| Q |
438 |
gtcctcaggcagatcaaacaaagatttcattcctgtgaacaattctccacataattcctttgagatttcatcacattttaagaggaagcaacctcgactc |
537 |
Q |
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| T |
6939446 |
gtcttcaggcagatcaaacaaagatttcattcctgtgaacaattgtccacataattcctttgagatttcatcacattttaagaggaagcaacctcgactc |
6939545 |
T |
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| Q |
538 |
tcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttcttctaatgtcactccactactcctacggaaatccaaaattgggatct |
637 |
Q |
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| T |
6939546 |
tcaaatgcttctctcactttcttgctcatttctttccacccttcactccctttttctaatgtcactccactactcctacggaaatccaaaattgggatct |
6939645 |
T |
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| Q |
638 |
cactttcactctccatttttctccc |
662 |
Q |
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| T |
6939646 |
cactttcattctccatttttctccc |
6939670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 424 - 591
Target Start/End: Original strand, 6932029 - 6932196
Alignment:
| Q |
424 |
aacttctccttggtgtcctcaggcagatcaaacaaagatttcattcctgtgaacaattctccacataattcctttgagatttcatcacattttaagagga |
523 |
Q |
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| T |
6932029 |
aacttctgcttagtctcctcgggtagatcaaacaatgatttcatgcctgtgaacaattcttcacgtgattgattcaagatttcatcaccccttacgatga |
6932128 |
T |
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| Q |
524 |
agcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttct |
591 |
Q |
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| T |
6932129 |
aacaaccatgattctcaaatgcttctctcactttcttgcacatttctttccatccttcactctcttct |
6932196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 6931853 - 6931915
Alignment:
| Q |
248 |
taataaaatacaaaattattaattacctaaatattggatttccttgaggccacatgaggttaa |
310 |
Q |
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| T |
6931853 |
taataaaataaaaaacaattaattacctaaaagttggatttccttgaggccacaagaggttaa |
6931915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 424 - 639
Target Start/End: Complemental strand, 49831903 - 49831688
Alignment:
| Q |
424 |
aacttctccttggtgtcctcaggcagatcaaacaaagatttcattcctgtgaacaattctccacataattcctttgagatttcatcacattttaagagga |
523 |
Q |
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||||||| |||||| |||||||| ||||||||||| |||||||| || ||||||| || | ||| |||||| |||| ||||||||||| ||||||| || |
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| T |
49831903 |
aacttctgcttggtctcctcaggtagatcaaacaatgatttcataccagtgaacattttttcacgtaattcatttggtatttcatcacactttaagaaga |
49831804 |
T |
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| Q |
524 |
agcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttcttctaatgtcactccactactcctacggaaatc |
623 |
Q |
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| T |
49831803 |
agcaaccatgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactgccttcttctaatgtcactccactacttttacgaaaatc |
49831704 |
T |
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| Q |
624 |
caaaattgggatctca |
639 |
Q |
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| T |
49831703 |
caaaattgggatctca |
49831688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 43682087 - 43681907
Alignment:
| Q |
8 |
ggaacaagatttggtgttctaacagcgtcctgctgtaacatatctcagccgtccgatctttaatcggtggctgaattgaaatcaaattttgtgaaaatca |
107 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||| | ||||||||||||| |||||| | |||||||| | |
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| T |
43682087 |
ggaacaggatttggtgttgcaacagtgtcctgctgtaacagatctcagccgtccgatcctcaatcggtggctgag-----atcaaactgtgtgaaaaccg |
43681993 |
T |
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| Q |
108 |
gataaataaatctgaactgtaaaatcacttttctaaggttcaaaccagctactgtgtgaagcatttacagtaggcgatccaggtcc |
193 |
Q |
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| T |
43681992 |
gacaaataaatctgaactgttgaatcacttttctacggttcagatcagctactgcgtgaagcatttacagcaggcgatctaggtcc |
43681907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 522 - 592
Target Start/End: Original strand, 2096357 - 2096427
Alignment:
| Q |
522 |
gaagcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttctt |
592 |
Q |
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| T |
2096357 |
gaagcaaccatgactctcacatgcttctctcacttttttgctcatttttttccactcctcactcccttctt |
2096427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 590
Target Start/End: Complemental strand, 12458958 - 12458883
Alignment:
| Q |
515 |
ttaagaggaagcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttc |
590 |
Q |
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| T |
12458958 |
ttaagaagaagcaaccatgactctcacatgcttctctcacttttttgctcatctttttccactcctcactcccttc |
12458883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 5859180 - 5859107
Alignment:
| Q |
8 |
ggaacaagatttggtgttctaacagcgtcctgctgtaacatatctcagccgtccgatctttaatcggtggctga |
81 |
Q |
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| T |
5859180 |
ggaacatgatttggtgcttaaactacgtcctgatgtaacatatctccgccgtccgatctttaatcgatggctga |
5859107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 142
Target Start/End: Complemental strand, 5859097 - 5859062
Alignment:
| Q |
107 |
agataaataaatctgaactgtaaaatcacttttcta |
142 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
5859097 |
agataaataaatctgaactgttaaatcacttttcta |
5859062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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