View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4433-Insertion-4 (Length: 490)

Name: NF4433-Insertion-4
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4433-Insertion-4
NF4433-Insertion-4
[»] chr5 (1 HSPs)
chr5 (7-466)||(2688054-2688513)
[»] chr3 (5 HSPs)
chr3 (142-456)||(42773644-42773960)
chr3 (219-430)||(52612788-52613000)
chr3 (234-462)||(1547637-1547866)
chr3 (377-433)||(44656976-44657032)
chr3 (375-423)||(55167506-55167554)
[»] chr7 (3 HSPs)
chr7 (168-463)||(22196976-22197272)
chr7 (168-463)||(22240549-22240845)
chr7 (142-462)||(39844913-39845235)
[»] chr6 (4 HSPs)
chr6 (168-463)||(20794321-20794616)
chr6 (239-446)||(14459362-14459570)
chr6 (376-423)||(33113403-33113450)
chr6 (380-436)||(2030995-2031051)
[»] chr8 (3 HSPs)
chr8 (213-436)||(5201117-5201341)
chr8 (168-405)||(27220312-27220550)
chr8 (375-436)||(10124218-10124279)
[»] chr1 (2 HSPs)
chr1 (375-423)||(38548074-38548122)
chr1 (375-417)||(12172359-12172401)
[»] chr4 (1 HSPs)
chr4 (219-359)||(7115020-7115160)


Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 7 - 466
Target Start/End: Original strand, 2688054 - 2688513
Alignment:
Q  7 aaaaccaacaatcagctgcgcagcagacaggcagcaccacctacacctgctgtactgtcatgatagcaacactaaacccagcaaaaatgccagcccccag 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  2688054 aaaaccaacaatcagctgcgcagcagacaggcagcagcacctacacctgctgtactgtcatgacagcaacactaaacccagcaaaaatgccagcccgcag 2688153  T
Q  107 ccgaaacacaatgaaaccggaagatagcagcagcattacctcaagagacactctcggggctccaactccactcataatacaaacatgccggagtattcga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2688154 ccgaaacacaatgaaaccggaagatagcagcagcattacctcaagagacactctcggggcaccaactccactcataatacaaacatgccggagtattcga 2688253  T
Q  207 tcgacttaacacccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattc 306  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2688254 tcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattc 2688353  T
Q  307 caaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcatttagtggtccccactccaacactcccaatggatgaataagtt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2688354 caaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttcttatttagtggtccccactccaacactcccaatggatgaataagtt 2688453  T
Q  407 tgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaacgttccgagc 466  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  2688454 tgggggcattataaaatgcaaatccaaccaagacatcgaagtcaaccaaacattccgagc 2688513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 142 - 456
Target Start/End: Original strand, 42773644 - 42773960
Alignment:
Q  142 ttacctcaagagacactctcgggg-ctccaactccactcataatacaaacatgccggagtattcgatcgacttaacacccacctccacgtcaacacttta 240  Q
    ||||||| |||||||||| ||||| | |||| ||||||||||| | ||||| | || |  ||| ||||  | ||||| ||||||||| | ||||||||||    
T  42773644 ttacctcgagagacactcccggggacaccaaatccactcataaaataaacacggcgcacaatttgatctccctaacaaccacctccaagacaacacttta 42773743  T
Q  241 acctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatcc 340  Q
    ||||||||||||| |||  |||| |  ||  | ||||| || |||||||| ||||||||||| |||||||  ||||||| |||||||||||||||||| |    
T  42773744 acctcctccactaactcaacccatcccgctatgacattgttgaaaatgcactcatttctagccttccaaattacccaaatcacggcctcccaaatcatac 42773843  T
Q  341 gcaagccattccggattttctcatttagtggt-ccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaaga 439  Q
    |||| ||||| |||| |||||  || || | | |||||||||||||||||||||| || || | |||||| ||||| | ||||||||| |||||||||||    
T  42773844 gcaaaccattacggactttcttcttaagagatcccccactccaacactcccaatgaataaagaggtttggaggcataacaaaatgcaagtccaaccaaga 42773943  T
Q  440 catcaaagtcaaccaaa 456  Q
    ||||||| |||||||||    
T  42773944 catcaaactcaaccaaa 42773960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 430
Target Start/End: Original strand, 52612788 - 52613000
Alignment:
Q  219 ccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaa 318  Q
    ||||||||| | ||||||||| |||| |||||| | ||| |||||   ||||||  ||||||| ||||| | |||||| || || ||||| || ||||||    
T  52612788 ccacctccatgacaacactttcaccttctccacaagctcatcccatggagcattctcattattgaaaatacgatcattcctcgctttccacaaaacccaa 52612887  T
Q  319 accacggcctcccaaatcatccgcaagccattccggattttctcatttagtggtcccc-actccaacactcccaatggatgaataagtttgggggcatta 417  Q
    | |||  ||||||||||||||| ||| || ||||| || |||| || ||    ||||| |||||||||||||||||| || || || ||||| |||||||    
T  52612888 atcaccacctcccaaatcatcctcaatcccttccgaatcttcttatgtatcaatcccccactccaacactcccaatgaattaacaaatttggcggcatta 52612987  T
Q  418 taaaatgcaaatc 430  Q
    |||||| ||||||    
T  52612988 taaaattcaaatc 52613000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 462
Target Start/End: Complemental strand, 1547866 - 1547637
Alignment:
Q  234 cactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaa 333  Q
    |||||| ||||||||||| | ||| |||||||| |||||  ||||||||||||| |   ||||||| || |||||||  |||||||  ||  |||||||     
T  1547866 cacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggccatttctcgccttccaaatcacccaaattaccacctcccat 1547767  T
Q  334 atcatccgcaagccattccggattttctcatttagtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatcca 432  Q
    ||||| ||||| || ||||  |||||||  || |  | ||||| ||||||||| |||||||| || | ||| || || ||||||| ||||| |||||| |    
T  1547766 atcatacgcaatcccttccaaattttcttgttaatagatcccccactccaacattcccaatgaataattaaattcggtggcattacaaaattcaaatcta 1547667  T
Q  433 accaagacatcaaagtcaaccaaacgttcc 462  Q
    ||||  |||||| | |||||||||| ||||    
T  1547666 accacaacatcacattcaaccaaacattcc 1547637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 433
Target Start/End: Original strand, 44656976 - 44657032
Alignment:
Q  377 actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaa 433  Q
    |||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||||    
T  44656976 actccagcactcccaatgaataaataaatttgggggcattataaaattcaaatccaa 44657032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 55167506 - 55167554
Alignment:
Q  375 ccactccaacactcccaatggatgaataagtttgggggcattataaaat 423  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  55167506 ccactccaacactcccaatggataaataaatttggaggcattataaaat 55167554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 168 - 463
Target Start/End: Complemental strand, 22197272 - 22196976
Alignment:
Q  168 ccaactccactcataatacaaacatgccggagtattcgatcgacttaacacccacctccacgtcaacactttaacctcctccactacctcctcccaccta 267  Q
    |||||||||||||||| |||| ||| ||| || ||| ||||  |  | || ||| ||||||| ||||||||| ||||||||||||| | | ||||| |||    
T  22197272 ccaactccactcataaaacaagcataccgtagaatttgatcttccaagcaaccatctccacgacaacacttttacctcctccactagcacatcccatcta 22197173  T
Q  268 gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcattta 367  Q
    ||| |||||||||||||||| |  ||||||||||| |||||||  ||||||| | |||||||||||||||| || || || ||||| | ||||| | | |    
T  22197172 gcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcccggcctcccaaatcattcgtaacccgttccgaactttcttaataa 22197073  T
Q  368 gtgg-tccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaacgttccg 463  Q
      ||  ||||||||||||||| ||||||||| || | ||| || ||||||||||||| ||||||||| |||||||||||| |||||||||| |||||    
T  22197072 aaggacccccactccaacacttccaatggataaaaaggttcggaggcattataaaattcaaatccaaacaagacatcaaactcaaccaaacattccg 22196976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 168 - 463
Target Start/End: Original strand, 22240549 - 22240845
Alignment:
Q  168 ccaactccactcataatacaaacatgccggagtattcgatcgacttaacacccacctccacgtcaacactttaacctcctccactacctcctcccaccta 267  Q
    |||||||||||||||| |||| ||| ||| || ||| ||||  |  | || ||| ||||||| ||||||||| ||||||||||||| | | ||||| |||    
T  22240549 ccaactccactcataaaacaagcataccgtagaatttgatcttccaagcaaccatctccacgacaacacttttacctcctccactagcacatcccatcta 22240648  T
Q  268 gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcattta 367  Q
    ||| |||||||||||||||| |  ||||||||||| |||||||  ||||||| | |||||||||||||||| || || || ||||| | ||||| | | |    
T  22240649 gcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcccggcctcccaaatcattcgtaacccgttccgaactttcttaataa 22240748  T
Q  368 gtgg-tccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaacgttccg 463  Q
      ||  ||||||||||||||| ||||||||| || | ||| || ||||||||||||| ||||||||| |||||||||||| |||||||||| |||||    
T  22240749 aaggacccccactccaacacttccaatggataaaaaggttcggaggcattataaaattcaaatccaaacaagacatcaaactcaaccaaacattccg 22240845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 462
Target Start/End: Complemental strand, 39845235 - 39844913
Alignment:
Q  142 ttacctcaagagacactctcgggg-ctccaactccactcataatacaaacatgccggagtattcgatcgacttaacacccacctccacgtcaacacttta 240  Q
    ||||||||| | ||| |||||||| | ||||||||| |||||| ||| ||| ||||||  |||  ||| || ||| | | ||||||| | || ||||||     
T  39845235 ttacctcaacaaacaatctcgggggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacatcactttt 39845136  T
Q  241 acctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatcc 340  Q
    ||||||||||| | ||| |||||||| |||||  ||||||||||||| |  |||||||| || |||||||  |||||||  ||  ||||||| ||||| |    
T  39845135 acctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgccttccaaatcacccaaattaccacctcccatatcatac 39845036  T
Q  341 gcaagccattccggattttctcatttagtggt-ccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaaga 439  Q
    |||| || ||||| ||||||| ||| |  | | ||||||||||||| |||||||| || | ||| || || ||||||| ||||| |||||| |||||  |    
T  39845035 gcaatcccttccgaattttcttattaatagatcccccactccaacattcccaatgaataattaaattcggtggcattacaaaattcaaatctaaccacaa 39844936  T
Q  440 catcaaagtcaaccaaacgttcc 462  Q
    ||||| | |||||||||| ||||    
T  39844935 catcacattcaaccaaacattcc 39844913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 168 - 463
Target Start/End: Complemental strand, 20794616 - 20794321
Alignment:
Q  168 ccaactccactcataatacaaacatgccggagtattcgatcgacttaacacccacctccacgtcaacactttaacctcctccactacctcctcccaccta 267  Q
    |||||||||||||||| |||| ||  ||| || ||| |||| || || || ||| ||||| | || |||||||||||||||||||| ||| ||| | |||    
T  20794616 ccaactccactcataaaacaagcaaaccgtagaatttgatctacctagcaaccatctccaagacatcactttaacctcctccactaactcatcctatcta 20794517  T
Q  268 gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcattta 367  Q
    ||| || ||||||||||| |||| ||||||||||| |||||||  ||||||| | || ||||| |||||||||||||  | ||||| | ||||| ||  |    
T  20794516 gcaatagcattattaaaattgcactcatttctagccttccaaatcacccaaatcccgacctcc-aaatcatccgcaactcgttccgaactttcttatgaa 20794418  T
Q  368 gtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaacgttccg 463  Q
      || |||| ||||||||||||||||||||| || | ||| |  ||||||||||||| |||||||||||||||||||||| |||||||||| |||||    
T  20794417 aaggacccccactccaacactcccaatggataaaaaggttcgaaggcattataaaattcaaatccaaccaagacatcaaactcaaccaaacattccg 20794321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 446
Target Start/End: Complemental strand, 14459570 - 14459362
Alignment:
Q  239 taacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcat 338  Q
    |||||||||| || | ||| |||||||||||| |  |||||||||||||||  ||||| |||||   |||||  ||||||||| |  ||||||| |||||    
T  14459570 taacctcctcaacaagctcatcccacctagcaatcccattattaaaaatgccctcattcctagcgcgccaaattacccaaaccgctacctcccatatcat 14459471  T
Q  339 ccgcaagccattccggattttctcatttagtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaa 437  Q
    ||||||||| ||||| || |||| ||  | || |||||  |||||||| ||||||||||| || || || || ||||| | ||||| |||||| ||||||    
T  14459470 ccgcaagcccttccgaatcttcttatgaattgatcccctgctccaacattcccaatggataaacaaattcggcggcataacaaaattcaaatctaaccaa 14459371  T
Q  438 gacatcaaa 446  Q
    | |||||||    
T  14459370 gtcatcaaa 14459362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 33113403 - 33113450
Alignment:
Q  376 cactccaacactcccaatggatgaataagtttgggggcattataaaat 423  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  33113403 cactccaacactcccaatggataaataaatttggaggcattataaaat 33113450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 436
Target Start/End: Original strand, 2030995 - 2031051
Alignment:
Q  380 ccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaacca 436  Q
    |||||||||||||||||| ||||| || || ||||||| ||||| ||||||||||||    
T  2030995 ccaacactcccaatggataaataaattgggtggcattacaaaattcaaatccaacca 2031051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 436
Target Start/End: Original strand, 5201117 - 5201341
Alignment:
Q  213 taacacccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaag 312  Q
    ||||| ||| ||||||  |||||| |||||||||||||||| ||| |||||||| ||| ||||||||||||||||  |  ||||||| || ||||||| |    
T  5201117 taacaaccatctccacaacaacaccttaacctcctccactaactcatcccaccttgcaataacattattaaaaataaacccatttctcgccttccaaatg 5201216  T
Q  313 acccaaaccacggcctcccaaatcatccgcaagccattccggattttctcatttagtggtcccca--ctccaacactcccaatggatgaataagtttggg 410  Q
    |||||||   |||| | ||||||||| | ||| || || |||||||||| | ||| |  | ||||    |||||| |||||||||| ||||||||| ||     
T  5201217 acccaaattgcggcttgccaaatcattctcaaacccttacggattttctta-ttaatattacccatcgcccaacattcccaatggacgaataagttgggt 5201315  T
Q  411 ggcattataaaatgcaaatccaacca 436  Q
    ||||||| ||||| ||||||||||||    
T  5201316 ggcattacaaaattcaaatccaacca 5201341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 405
Target Start/End: Complemental strand, 27220550 - 27220312
Alignment:
Q  168 ccaactccactcataatacaaacatgccggagtattcgatcgacttaacacccacctccacgtcaacactttaacctcctccactacctcctcccaccta 267  Q
    |||| |||||||||||||||||||||| ||| ||||  |||  | ||| | ||| ||||| | || ||| || ||||||||||||| ||| ||||||       
T  27220550 ccaagtccactcataatacaaacatgctggaatattaaatcttcctaaaagccatctccaagacaccaccttcacctcctccactaactcgtcccacaat 27220451  T
Q  268 gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcattta 367  Q
    || ||  ||| ||| ||||| |  |||||||| ||  ||||||  | ||||| | | |||||||| ||||| ||||| || ||||||||||||| ||| |    
T  27220450 gcgttctcatcattgaaaatacggtcatttcttgctctccaaattatccaaatcgccgcctcccatatcatacgcaaacccttccggattttcttattga 27220351  T
Q  368 gtggtcc-ccactccaacactcccaatggatgaataagt 405  Q
      || || ||||||||||||||||||||||| |||||||    
T  27220350 tcgggcctccactccaacactcccaatggataaataagt 27220312  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 10124279 - 10124218
Alignment:
Q  375 ccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaacca 436  Q
    |||||||||||||||||||| || |  |||||||| ||||||||||||| ||||| ||||||    
T  10124279 ccactccaacactcccaatgaataaccaagtttggaggcattataaaattcaaattcaacca 10124218  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 38548122 - 38548074
Alignment:
Q  375 ccactccaacactcccaatggatgaataagtttgggggcattataaaat 423  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  38548122 ccactccaacactcccaatggataaataaatttggaggcattataaaat 38548074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 12172401 - 12172359
Alignment:
Q  375 ccactccaacactcccaatggatgaataagtttgggggcatta 417  Q
    ||||||||||||||||||||||| || |||||||| |||||||    
T  12172401 ccactccaacactcccaatggataaacaagtttggaggcatta 12172359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 7115020 - 7115160
Alignment:
Q  219 ccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaa 318  Q
    ||||||||||| ||  || || ||||||||||||| ||| |||||||||||  |  |||| || ||||| ||| ||||||| ||  ||||||  ||||||    
T  7115020 ccacctccacgacataaccttgacctcctccactaactcatcccacctagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaa 7115119  T
Q  319 accacggcctcccaaatcatccgcaagccattccggatttt 359  Q
    | |||  |||||||||||| || ||  || |||||||||||    
T  7115120 atcacaacctcccaaatcaacctcattcccttccggatttt 7115160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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