View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4433_high_5 (Length: 401)
Name: NF4433_high_5
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4433_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 44799682 - 44799806
Alignment:
| Q |
195 |
ggttgcttgcggcacaagaatctggttcagcttaaaggacagtgttgtgaagggaatgaactggttttggtttatgagtatttaccatatggaagccttc |
294 |
Q |
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| T |
44799682 |
ggttgcttgcggcacaagaatctggttcagcttaaagggtggtgttgtgaagggaatgaattggttttggtttatgagtatctaccaaatggaagccttg |
44799781 |
T |
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| Q |
295 |
ataaagttcttcatagaaatttaag |
319 |
Q |
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| T |
44799782 |
ataaagttctgcataggaatttaag |
44799806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 8350090 - 8349969
Alignment:
| Q |
1 |
ggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtattaatttacatctgctactt |
100 |
Q |
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| T |
8350090 |
ggaaaaatcaaagggagctccaattatagtttcttatttccctgttaactattatccctcacgcttgtagtcatgcaatgttaatttacatctgctactt |
8349991 |
T |
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| Q |
101 |
-atcaagaagagtgtaatcaac |
121 |
Q |
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| T |
8349990 |
aattatcaagagtgtaatcaac |
8349969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 8260657 - 8260574
Alignment:
| Q |
2 |
gaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtattaat |
85 |
Q |
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| T |
8260657 |
gaaaaatcaaagagagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtattaat |
8260574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 8349669 - 8349624
Alignment:
| Q |
185 |
ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa |
230 |
Q |
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| T |
8349669 |
ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa |
8349624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8352816 - 8352758
Alignment:
| Q |
1 |
ggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccct |
59 |
Q |
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| T |
8352816 |
ggaaaaatctaatggagcttcaattgtagtttcttatttccctgttaactattatccct |
8352758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8252936 - 8252867
Alignment:
| Q |
1 |
ggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtag |
70 |
Q |
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| T |
8252936 |
ggaaaaatcaaagggagctccaattgcagtttcttatttctctgttaacaattgtctctcacgcttgtag |
8252867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8334091 - 8334018
Alignment:
| Q |
1 |
ggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattat-ccctcgcgcttgtagtca |
73 |
Q |
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| T |
8334091 |
ggaaaaatcaaaaggagttccaattgtagtttcttatttcctcgttaactattatcccctcacgcttgtagtca |
8334018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8265624 - 8265551
Alignment:
| Q |
1 |
ggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat |
74 |
Q |
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| T |
8265624 |
ggaaaaatcaaagggagctccaattgtagtatatcatttccctgctaactcttatctctctcgtttgtagtcat |
8265551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8258551 - 8258478
Alignment:
| Q |
1 |
ggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat |
74 |
Q |
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| T |
8258551 |
ggaaaaatcaaagggagctccaattgtagtatatcatttccctactaactcttatctctcacgtttgtagtcat |
8258478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8356383 - 8356339
Alignment:
| Q |
1 |
ggaaaaatcaaagggagctccgattgtagtttcttatttccctgt |
45 |
Q |
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| T |
8356383 |
ggaaaaatcaatgggagctccaattgtagttccttatttccctgt |
8356339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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