View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4433_low_10 (Length: 259)

Name: NF4433_low_10

Description: NF4433

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4433_low_10

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 181; E-Value: 7e-98

Query Start/End: Original strand, 18 - 206

Target Start/End: Original strand, 43626801 - 43626989

Alignment:

Q	18	attatgcacatacctttttatatgtgtcatatgtgaaaagaacaaattgaagatgagatgctgatttcatgtgtgagtgttagtctcacccaattgcaag	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43626801	attatgcacatacctttttatatgtgtcatatgtgaaaagaacaaattgaagatgagatgctgatttcatgtgtgagtgttagtctcacccaattgcaag	43626900	T

Q	118	aaacgcatataagattatttgatcatttgaagatacacgattatttgatgatacacgagggtgaaaagatatgtaccaattacttcaag	206	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	43626901	aaacgcatataggattatttgatcatttgaagatacacgattatttgatgatacacgagggtgaaaagatatgtaccaattacatcaag	43626989	T

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Target: chr7; HSP #2

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 198 - 230

Target Start/End: Original strand, 43627039 - 43627071

Alignment:

Q	198	tacttcaagcacctttaattttaaattttcaca	230	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43627039	tacttcaagcacctttaattttaaattttcaca	43627071	T

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