View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4433_low_12 (Length: 256)

Name: NF4433_low_12
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4433_low_12
NF4433_low_12
[»] chr3 (1 HSPs)
chr3 (10-240)||(22203537-22203766)
[»] chr5 (2 HSPs)
chr5 (23-55)||(6715868-6715900)
chr5 (17-53)||(39594922-39594958)
[»] chr4 (1 HSPs)
chr4 (17-54)||(17822783-17822820)
[»] chr2 (1 HSPs)
chr2 (17-54)||(27317494-27317531)
[»] chr8 (1 HSPs)
chr8 (17-53)||(2606164-2606200)
[»] chr7 (1 HSPs)
chr7 (17-53)||(33266405-33266441)
[»] chr1 (1 HSPs)
chr1 (22-54)||(28043737-28043769)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 22203537 - 22203766
Alignment:
Q  10 aaaattaatgtcggtagataagctcgaataagttaatccaaacagtaatggnnnnnnnatgtttgaacacaatcacaattgaggtctctttggtcgtatt 109  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||||    
T  22203537 aaaattaatgtcggtagataagctcgaatatgttaatccaaacagtaatggtttttt-atgtttgaacacaatcacaattgaggtctctttggtcttatt 22203635  T
Q  110 tcattgtgtttctacgcaacattaaggatcatgctgcaaccacaatcgttatcaaaaaccactatttaagaccttgcataggtttttaatgttatttatt 209  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22203636 tcattgtgtttctccgcaatattaaggatcatgctgcaaccacaatcgttatcaaaaaccactatttaagaccttgcataggtttttaatgttatttatt 22203735  T
Q  210 tatggaaaacccaatgtgcctagtaacaaaa 240  Q
    |||||||||||||||||||||||| ||||||    
T  22203736 tatggaaaacccaatgtgcctagtgacaaaa 22203766  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 6715900 - 6715868
Alignment:
Q  23 gtagataagctcgaataagttaatccaaacagt 55  Q
    |||||||||||||||||||||||||||||||||    
T  6715900 gtagataagctcgaataagttaatccaaacagt 6715868  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 39594922 - 39594958
Alignment:
Q  17 atgtcggtagataagctcgaataagttaatccaaaca 53  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  39594922 atgtcggtagataagctcaaataagtcaatccaaaca 39594958  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 17822820 - 17822783
Alignment:
Q  17 atgtcggtagataagctcgaataagttaatccaaacag 54  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  17822820 atgtcagtagataagctcaaataagttaatccaaacag 17822783  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 27317494 - 27317531
Alignment:
Q  17 atgtcggtagataagctcgaataagttaatccaaacag 54  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  27317494 atgtcggtagataagctcaaataagtcaatccaaacag 27317531  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 2606164 - 2606200
Alignment:
Q  17 atgtcggtagataagctcgaataagttaatccaaaca 53  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  2606164 atgtcagtagataagctcgaataagtcaatccaaaca 2606200  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 33266441 - 33266405
Alignment:
Q  17 atgtcggtagataagctcgaataagttaatccaaaca 53  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  33266441 atgtcggtagataagctcaaataagtcaatccaaaca 33266405  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 28043737 - 28043769
Alignment:
Q  22 ggtagataagctcgaataagttaatccaaacag 54  Q
    ||||||||| |||||||||||||||||||||||    
T  28043737 ggtagataaactcgaataagttaatccaaacag 28043769  T

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