View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4433_low_15 (Length: 250)

Name: NF4433_low_15
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4433_low_15
NF4433_low_15
[»] chr3 (1 HSPs)
chr3 (11-250)||(22203092-22203331)
[»] chr1 (6 HSPs)
chr1 (102-164)||(17468310-17468372)
chr1 (107-164)||(38733353-38733410)
chr1 (102-167)||(52676326-52676391)
chr1 (107-166)||(38668331-38668390)
chr1 (107-164)||(369606-369663)
chr1 (111-164)||(52961557-52961610)
[»] chr6 (3 HSPs)
chr6 (107-164)||(33494510-33494567)
chr6 (107-166)||(12199859-12199918)
chr6 (107-164)||(24554088-24554145)
[»] chr8 (2 HSPs)
chr8 (102-164)||(29907782-29907844)
chr8 (104-164)||(8466544-8466604)
[»] chr5 (1 HSPs)
chr5 (102-164)||(1564623-1564685)
[»] scaffold0766 (1 HSPs)
scaffold0766 (107-164)||(6245-6302)
[»] scaffold0692 (1 HSPs)
scaffold0692 (107-164)||(5810-5867)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 22203092 - 22203331
Alignment:
Q  11 cacagatcaatttttgtaagcaaaagcaagcaagaatcatttgagtttgatgagaggaaaagcccaaatgaggtaacacccatcacttacttgttaaaga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22203092 cacagatcaatttttgtaagcaaaagcaagcaagaatcatttgagtttgatgagaggaaaagcccaaatgaggtaacacccatcacttacttgttaaaga 22203191  T
Q  111 gtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcatgttagttgtattgttctttagtgcatttgattaggcttttactt 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  22203192 gtcccacatcggatacgagatagtttcaaaaaatgtttataagtgagggcaatcatgttagttgtgttgtgctttagtgcatttgattaggcttttactt 22203291  T
Q  211 aaactaagaattaaggtcaatcaccatgatgtctgcaact 250  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  22203292 aaattaagaattaaggtcaatcaccatgatgtctgcaact 22203331  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 17468310 - 17468372
Alignment:
Q  102 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    |||||||||||||||||||||||| ||||| || ||| || ||||||||||||| ||||||||    
T  17468310 tgttaaagagtcccacatcggataagagatggtctgacaatatgtttataagtgggggcaatc 17468372  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 38733353 - 38733410
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||||||| | ||| || ||| || ||||||||||||||||||||||    
T  38733353 aagagtcccacatcggatatgtgatggtctgacaatatgtttataagtgagggcaatc 38733410  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 52676391 - 52676326
Alignment:
Q  102 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcatg 167  Q
    |||||||||||||||||| ||||| ||||| || |||| || |||||||||||| ||| |||||||    
T  52676391 tgttaaagagtcccacattggataagagatggtatgaacaagtgtttataagtgggggtaatcatg 52676326  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 38668331 - 38668390
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcat 166  Q
    ||||||||||||||||||| | ||| |||||| ||  |||||||||||| ||||||||||    
T  38668331 aagagtcccacatcggatatgtgatggtttgacaatgtgtttataagtgggggcaatcat 38668390  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 369606 - 369663
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||||  | |||||||| ||||||  |||||||||||| ||||||||    
T  369606 aagagtcccacatcgggcaggagatagtctgaaaatgtgtttataagtgggggcaatc 369663  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 52961557 - 52961610
Alignment:
Q  111 gtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||| ||||| || ||| ||  |||||||||||||||||||||    
T  52961557 gtcccacatcggataggagatggtctgacaatgtgtttataagtgagggcaatc 52961610  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 33494510 - 33494567
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||||||| ||||| | ||||||| ||||||||||||| ||||||||    
T  33494510 aagagtcccacatcggataggagatggcttgaaaatatgtttataagtgggggcaatc 33494567  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 12199918 - 12199859
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcat 166  Q
    ||||||||||||||||||| || || || ||| || ||||||||||||| ||||||||||    
T  12199918 aagagtcccacatcggataagatatggtctgacaatatgtttataagtgggggcaatcat 12199859  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 24554088 - 24554145
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||||||| ||||| || ||| || || |||||||||| ||||||||    
T  24554088 aagagtcccacatcggataggagatggtctgacaatatatttataagtgggggcaatc 24554145  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 29907844 - 29907782
Alignment:
Q  102 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    |||||||||||||||||||||||| |||||||| ||| ||  |||||||||||| || |||||    
T  29907844 tgttaaagagtcccacatcggataagagatagtctgacaatgtgtttataagtggggtcaatc 29907782  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 8466604 - 8466544
Alignment:
Q  104 ttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||| |||||||||||||| ||||| || |||| || |||||||||||| ||| ||||    
T  8466604 ttaaagaatcccacatcggataagagatggtctgaacaagtgtttataagtgggggaaatc 8466544  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 1564685 - 1564623
Alignment:
Q  102 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    |||||||||||||||||||||||| ||||| || ||| ||  || ||||||||| ||||||||    
T  1564685 tgttaaagagtcccacatcggataagagatggtctgacaatgtgattataagtgggggcaatc 1564623  T

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Target: scaffold0766 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 6245 - 6302
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    |||||||||||||| |||| |||||||| ||| ||  |||||||||||| ||||||||    
T  6245 aagagtcccacatcagataagagatagtctgacaatgtgtttataagtgggggcaatc 6302  T

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Target: scaffold0692 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 5867 - 5810
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||||||| || ||||| ||| ||  |||||||||||| ||||||||    
T  5867 aagagtcccacatcggataagacatagtctgacaatgtgtttataagtgggggcaatc 5810  T

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