View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4433_low_16 (Length: 243)
Name: NF4433_low_16
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4433_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 49705564 - 49705344
Alignment:
| Q |
6 |
gaggaggagcacagagcacatgatttagcaaattttccttagtataaacagcagcagcatttccattgtgtccatcaaagatctgtgaaccagaagaagt |
105 |
Q |
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| T |
49705564 |
gaggaagagcacacaacacatgatttagcaaattttccttagtataaacagcagcagcatttccattgtgtccatcaaagatctgtgaaccagaagaagt |
49705465 |
T |
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| Q |
106 |
ga-gtaaaaaa-ttaaagcaatctccggacagctagctaagctattatgtcatgtagttcaaaaggagtaaatatataatctgaaattgaaatagtgaaa |
203 |
Q |
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| T |
49705464 |
gaagtaaaaaaattaaagcaatctccggacagctagctaagctattatgtcatgtagttcaaaaggagtaaataaataatctgaaactgaaatagtgaaa |
49705365 |
T |
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| Q |
204 |
gataccgcgaatacagaaaac |
224 |
Q |
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|||||||||||||||||||| |
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| T |
49705364 |
tataccgcgaatacagaaaac |
49705344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 6009265 - 6009326
Alignment:
| Q |
23 |
acatgatttagcaaattttccttagtataaacagcagcagcatttccattgtgtccatcaaa |
84 |
Q |
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|||| |||||| | ||| ||||||| ||||| |||||||||| |||||||||||||||||| |
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| T |
6009265 |
acattatttagaagattctccttagaataaatagcagcagcagatccattgtgtccatcaaa |
6009326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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