View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4433_low_17 (Length: 239)
Name: NF4433_low_17
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4433_low_17 |
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| [»] chr8 (20 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 20)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 4692039 - 4692261
Alignment:
| Q |
17 |
agctcttaccatcaagttgaccttattaaggacgacaaagattatgcattaggcagggagaagggaacgataaattaatttttcttatgctttcatttta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4692039 |
agctcttaccatcaagttgaccttattaaggacgacaaagattatgcattaggcagggagaagggaacgataaattaatttttcttatgctttcatttta |
4692138 |
T |
|
| Q |
117 |
aatgctagttcagaatttcatgactaatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttgatgca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4692139 |
aatgctagttcagaatttcatgactaatgtctatttgcatgcagtggaaaactcaactatcttaaattggaatgagaggcttaagattgcagttgatgca |
4692238 |
T |
|
| Q |
217 |
gcacatggtaatgtattgtttat |
239 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
4692239 |
gcacatggtaatgtattgtttat |
4692261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 4729081 - 4729227
Alignment:
| Q |
93 |
aatttttcttatgctttcattttaaatgctagttcagaatttcatgactaatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgag |
192 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| |||||| |||||| ||||||||| | ||| |||||||||||||| ||||||||||||| |||||||||| |
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| T |
4729081 |
aatttttcctatgctttcgttttaaatgcttgttcagtatttcaagactaatgtatgttttcatgcagtggaaaattcaaatatcttaagttggaatgag |
4729180 |
T |
|
| Q |
193 |
aggcttaagattgcagttgatgcagcacatggtaatgtattgtttat |
239 |
Q |
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|||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
4729181 |
aggcttaacattgcagttgacacagcacatggtaatttattgtttat |
4729227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 4739836 - 4739979
Alignment:
| Q |
96 |
ttttcttatgctttcattttaaatgctagttcagaatttcatgactaatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagagg |
195 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||||| |||||| ||||||||| | || |||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
4739836 |
ttttcctatgctttcgttttaaatgcttgttcagtatttcaagactaatgtatgttctcatgcagtggaaaattcaaatatcttaagttggaatgagagg |
4739935 |
T |
|
| Q |
196 |
cttaagattgcagttgatgcagcacatggtaatgtattgtttat |
239 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
4739936 |
cttagcattgcagttgacacagcacatggtaatgtattgtttat |
4739979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 4826579 - 4826484
Alignment:
| Q |
144 |
tgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaatgtattgtttat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
4826579 |
tgtctatttgcatgcagtggaaaactcaaatatcttaaactggaacgagagacttaacattgcagttgatgcagcacaaggtaatgtattgtttat |
4826484 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 4773493 - 4773390
Alignment:
| Q |
125 |
ttcagaatttcatgactaatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatgg |
224 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||| || |
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|
| T |
4773493 |
ttcagaatttcgagactaatgcctatttgcatgcagtggaaaattcaaatatgttaaattggaatgagagacttaacattgcagttgatgcagcacacgg |
4773394 |
T |
|
| Q |
225 |
taat |
228 |
Q |
| |
|
|||| |
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|
| T |
4773393 |
taat |
4773390 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 239
Target Start/End: Original strand, 4684130 - 4684276
Alignment:
| Q |
89 |
aattaatttttcttatgctttcattttaaatgctagttcagaatttcatgactaatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaa |
188 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||||| ||||||| | |||| |||| | || |||||||||||||| || ||||||||||||||||| |
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|
| T |
4684130 |
aattgatttttcctatgctttaattttaaatgctt----agaattttaagacttatgtttgttcccatgcagtggaaaattcgaatatcttaaattggaa |
4684225 |
T |
|
| Q |
189 |
tgagaggcttaagattgcagttgatgcagcacatggtaatgtattgtttat |
239 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
4684226 |
tgagaggcttaacattgcagttgacgcagcacaaggtaatgtattgtttat |
4684276 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 4887488 - 4887391
Alignment:
| Q |
142 |
aatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaatgtattgtttat |
239 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
4887488 |
aatgcctatatgcatgcagtggaaaattcaaagatcttaaattggaatgagagacttaacattgcagttgatgcagcatatggtaatgtattgtttat |
4887391 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 4752963 - 4753089
Alignment:
| Q |
113 |
tttaaatgctagttcagaatttcatgactaatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttga |
212 |
Q |
| |
|
|||||||||| |||||| | | || ||||||||| | ||| ||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
4752963 |
tttaaatgcttgttcagtactccaagactaatgtatgttttaatgcagtagaaaattcaaatatcttaagttggaatgagaggcttaacattgcagttga |
4753062 |
T |
|
| Q |
213 |
tgcagcacatggtaatgtattgtttat |
239 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
4753063 |
cacagcacatggtaaagtattgtttat |
4753089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 4846964 - 4846874
Alignment:
| Q |
141 |
taatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaatgta |
231 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| ||||||||| | |||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4846964 |
taatgtctattttcatgcagtggaaaattcaaatatcataaattggactaagagacttaaaattgcagttgatgcagcacatggtaatgta |
4846874 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 4708828 - 4708968
Alignment:
| Q |
97 |
tttcttatgctttcattttaaatgctagttcagaatttcatgactaatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggc |
196 |
Q |
| |
|
|||| ||||||||| ||| ||||||| |||||| |||||| ||||||| | |||||||||||| ||||| ||||||| ||||| ||||||| |||||| |
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|
| T |
4708828 |
tttcctatgctttcgtttaaaatgcttgttcagtatttcaaagctaatgtatgtttgcatgcagtagaaaattcaaataccttaagttggaatcagaggc |
4708927 |
T |
|
| Q |
197 |
ttaagattgcagttgatgcagcacatggtaatgtattgttt |
237 |
Q |
| |
|
|||| ||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
4708928 |
ttaacattgctgttgacacagcccatggtaatgtattgttt |
4708968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 4801659 - 4801571
Alignment:
| Q |
143 |
atgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaatgta |
231 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| |||| | |||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
4801659 |
atgtctattttcatgcagtggaaaattcaaatatcttaaactggactaagagacttaaaattgcagttgatgcagcacatggtaatgta |
4801571 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 4719044 - 4719150
Alignment:
| Q |
131 |
atttcatgactaatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaatgt |
230 |
Q |
| |
|
|||||| ||||||||| | ||||| |||||| |||| ||||||||| ||| |||||||||||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
4719044 |
atttcaagactaatgtatgtttgcttgcagtaaaaaattcaaatatcctaagttggaatgagaggcttaacattgcagttgacacagcccatggtaatgt |
4719143 |
T |
|
| Q |
231 |
attgttt |
237 |
Q |
| |
|
||||||| |
|
|
| T |
4719144 |
attgttt |
4719150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 4919869 - 4919760
Alignment:
| Q |
125 |
ttcagaatttcatgactaatgtctat---ttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcaca |
221 |
Q |
| |
|
|||||| ||||| |||||||| |||| |||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
4919869 |
ttcagagtttcaagactaatgcctataatttgcatgcagcggaaacttcaaatatcttaaaatggaatgagagacttaacattgcagttgatgcagcaaa |
4919770 |
T |
|
| Q |
222 |
tggtaatgta |
231 |
Q |
| |
|
||||||||| |
|
|
| T |
4919769 |
cggtaatgta |
4919760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 4791514 - 4791432
Alignment:
| Q |
149 |
atttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaatgta |
231 |
Q |
| |
|
||||||||||||||||||| |||||| |||| || |||| |||||| || || |||||||||||| ||||| ||||||||||| |
|
|
| T |
4791514 |
atttgcatgcagtggaaaattcaaatgtcttgaactggactgagagactcaacattgcagttgatacagcatatggtaatgta |
4791432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 4870364 - 4870266
Alignment:
| Q |
130 |
aatttcatgactaatgtctatttgcatgcagtggaaaactcaaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaat |
228 |
Q |
| |
|
||||||| || ||||| |||||||| ||||| || || || |||||||||| ||||||||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
4870364 |
aatttcaagattaatgcctatttgcgtgcagatgataatacacatatcttaaaatggaatgagagactcaaaattgcagttgatgcagcacatggtaat |
4870266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 4910240 - 4910180
Alignment:
| Q |
170 |
caaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaatgt |
230 |
Q |
| |
|
||||||| ||||| ||||||||||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
4910240 |
caaatattttaaaatggaatgagagactaaaaattgcagttgatgcagcacatggtaatgt |
4910180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 4897994 - 4897936
Alignment:
| Q |
170 |
caaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaat |
228 |
Q |
| |
|
||||| ||||||| ||||||||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
4897994 |
caaatgtcttaaaatggaatgagagactcaaaattgcagttgatgcagcacatggtaat |
4897936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 10450277 - 10450338
Alignment:
| Q |
170 |
caaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaatgta |
231 |
Q |
| |
|
|||||||||| || ||||||||||| || || ||||| |||||||||||||||||||||||| |
|
|
| T |
10450277 |
caaatatcttgaaatggaatgagagactcaaaattgcggttgatgcagcacatggtaatgta |
10450338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 10454703 - 10454764
Alignment:
| Q |
170 |
caaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaatgta |
231 |
Q |
| |
|
|||||||||| || ||||||||||| || || ||||| |||||||||||||||||||||||| |
|
|
| T |
10454703 |
caaatatcttgaaatggaatgagagactcaaaattgcggttgatgcagcacatggtaatgta |
10454764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 21436874 - 21436814
Alignment:
| Q |
170 |
caaatatcttaaattggaatgagaggcttaagattgcagttgatgcagcacatggtaatgt |
230 |
Q |
| |
|
||||| ||||||| ||||||||||| || || || ||||||||||||||| |||||||||| |
|
|
| T |
21436874 |
caaatgtcttaaaatggaatgagagactcaaaatcgcagttgatgcagcatatggtaatgt |
21436814 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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