View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4433_low_18 (Length: 238)
Name: NF4433_low_18
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4433_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35841668 - 35841450
Alignment:
| Q |
1 |
tccggaggctcaaagtttgaagtttgaaattgagcccaaaaaagcactaacttggtttccatagtggacaactatagagtattttatgtttttcatgcct |
100 |
Q |
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| T |
35841668 |
tccggaggctcaaagttttaagtttgaaattgagcccaaaaaagcactaacttggtttccatagtggacaactatagagtattttatgtttttcatgcct |
35841569 |
T |
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| Q |
101 |
aattttgagattcgtcaatgtctgtctccactaaagttcaaatggatctcagttttttattacctttgaaatgtatatatataaacaaataaagacaaac |
200 |
Q |
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| T |
35841568 |
aatttcgagattcgtcaatgtctgtctccactaaagttcaaatggatctcagttttttattacctttgaaatgtata--tataaacaaataaagacaaac |
35841471 |
T |
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| Q |
201 |
atttttcaaattagtaacatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
35841470 |
atttttcaaattagtaacatt |
35841450 |
T |
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