View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4433_low_2 (Length: 491)
Name: NF4433_low_2
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4433_low_2 |
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| [»] scaffold1744 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 476
Target Start/End: Complemental strand, 46467272 - 46466812
Alignment:
| Q |
13 |
aaaataaaagtgatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtgcttaaacacatccat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46467272 |
aaaataaaagtgatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtgcttaaacacatccat |
46467173 |
T |
|
| Q |
113 |
gattaggagtcaaaagtgccctaagcacgtccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaataag |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46467172 |
gattaggagtcaaaagtgccctaagcacatccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaataag |
46467073 |
T |
|
| Q |
213 |
tttcacattgttatcactatgagaaatcaacaacttacaataagcactagcagcagcttcaattgcagtaggtgcagaactaagtgaaacaagtgcacca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46467072 |
tttcacattgttatcactatgagaaatcaacaacttacaataagcactagcagcagcttcaattgcagtaggtgcag---taagtgaaacaagtgcacca |
46466976 |
T |
|
| Q |
313 |
gcacattcataaacaacatcattagaacttgcactcaacaaatacttaacaatcgcgatatattttgccttttcacccttattgttattcacagaaactt |
412 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466975 |
gcacattcataaacaacagcattagaacttgcactcaacaaatacttaacaatcgcgatatattttgccttttcacccttattgttattcacagaaactt |
46466876 |
T |
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| Q |
413 |
tcttaatcaattccaaaacaagcatttgaagctgttcactccaatcaagaatcctatcaatatt |
476 |
Q |
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| T |
46466875 |
tcttaatcaattccaaaacaagcatttgaagctgttcactccaatcaagaatcctatcaatatt |
46466812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 110 - 476
Target Start/End: Complemental strand, 1472089 - 1471726
Alignment:
| Q |
110 |
catgattaggagtcaaaagtgccctaagcacgtccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaat |
209 |
Q |
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|||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
1472089 |
catgattaggagtcgataacgccctaagcacatccataaccatatcaaccataatctccctattatccctcttaagctcgttaagccgatcaagcacaat |
1471990 |
T |
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| Q |
210 |
aagtttcacattgttatcactatgagaaatcaacaacttacaataagcactagcagcagcttcaattgcagtaggtgcagaactaagtgaaacaagtgca |
309 |
Q |
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| T |
1471989 |
aagcttcacattgttatcactctgagaaagcaataactgacaataagtattcgcagccgctttaatcgcggttggtgcagaactaagcgaaacaagcgta |
1471890 |
T |
|
| Q |
310 |
ccagcacattcataaacaacatcattagaacttgcactcaacaaatacttaacaatcgcgatatattttgccttttcacccttattgttattcacagaaa |
409 |
Q |
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| T |
1471889 |
ccagcacattcataaacaacagcagtagaattagcactcaacaaagaaataataatcttaatatatttccctttctccccctta---ttattcctacaaa |
1471793 |
T |
|
| Q |
410 |
ctttcttaatcaattccaaaacaagcatttgaagctgttcactccaatcaagaatcctatcaatatt |
476 |
Q |
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||||||||||||||||||| || | |||||| | |||||| | |||||||| ||||||||||||||| |
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| T |
1471792 |
ctttcttaatcaattccaacaccaccatttgtaactgttccccccaatcaataatcctatcaatatt |
1471726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 55202673 - 55202717
Alignment:
| Q |
130 |
gccctaagcacgtccataaccatatcaaccataatctccctatta |
174 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
55202673 |
gccctaagcacatccataaccatatcaaccataatttccctatta |
55202717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 450
Target Start/End: Original strand, 55202920 - 55202963
Alignment:
| Q |
407 |
aaactttcttaatcaattccaaaacaagcatttgaagctgttca |
450 |
Q |
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| T |
55202920 |
aaactttcttaatcacttccaaaacaatcatttgaagttgttca |
55202963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 187184 - 187268
Alignment:
| Q |
13 |
aaaataaaagtgatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtg |
97 |
Q |
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|||||| ||||||| | ||||||||| |||||| ||||| ||||||||||||| |||||||| |||||||||||||||||| |
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| T |
187184 |
aaaatagaagtgatttaatgagaaaattgcaatgcacgtttgagagggagaaagagtttttgactgtaagttgcaagtcaaggtg |
187268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1744 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1744
Description:
Target: scaffold1744; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 529 - 612
Alignment:
| Q |
13 |
aaaataaaagtgatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtg |
97 |
Q |
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|||||| ||||||| | ||||||||| |||||| ||||| ||||||||| ||| |||||||| |||||||||||||||||| |
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| T |
529 |
aaaatagaagtgatttaatgagaaaattgcaatgcacgtttgagagggagaaggag-ttttgactgtaagttgcaagtcaaggtg |
612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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