View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4433_low_3 (Length: 432)
Name: NF4433_low_3
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4433_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 18419097 - 18418693
Alignment:
| Q |
12 |
acatcatcatgcggagttatgatgtatgaatgtgaaatggcataaaaccacctcatgtatccagttgctatgtctagaccagtcggagcaagcagaccta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |
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| T |
18419097 |
acatcatcatgcggagttatgatgtatgaatgtgaaatggcataaaaccacctcatgtatccagctgctatgtctagaccaatcggagcaggcagaccta |
18418998 |
T |
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| Q |
112 |
aatcatgtgctcttagcacatgatcaaggtactacacacaacactacgaggtcccgcaaagggatggtttggacacaaccaaactggcacaacacccgcc |
211 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |
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| T |
18418997 |
aatcatgtgctcttagcacatgaccaaggtactacacacaacactgcgaggtcccgcatggggatagtttggacataaccaaactggcacaacacccgcc |
18418898 |
T |
|
| Q |
212 |
cccacagatttcagacgttctgaggtccctatttgagccacccaaagtaaagactaattcgcacaaacaaacatgtctcgcagtggcaccgatacatgtt |
311 |
Q |
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| T |
18418897 |
cccacagatttcatatgttctgaggtccctatttgagccatccaaagtaaagactaattcgcacaaacaaacatgtctcgcagtggcactgatacatgtt |
18418798 |
T |
|
| Q |
312 |
catgagaatggagctaagatccatgtgattcagatgacatcttgtgggatttgcgacaacatgaccctttaaggaaacaaacatcatggcacatggataa |
411 |
Q |
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| T |
18418797 |
catgagaatggagctaagatccatgtgattcagatgagatcttgtgggatttgcgacaacatgaccctttaaggaaacaaacatcatggcacatggataa |
18418698 |
T |
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| Q |
412 |
ccatc |
416 |
Q |
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| T |
18418697 |
ccatc |
18418693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 9402971 - 9403048
Alignment:
| Q |
322 |
gagctaagatccatgtgattcagatgacatcttgtgggatttgcgacaacatgaccctttaaggaaacaaacatcatg |
399 |
Q |
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| T |
9402971 |
gagctaagacccatgtgatccaaatgggatcatgtgggatctacgacaacatgaccctttaaggaaacaaacatcatg |
9403048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 25579961 - 25580036
Alignment:
| Q |
24 |
ggagttatgatgtatgaatgtgaaatggcataaaaccacctcatgtatccagttgctatgtctagaccagtcggag |
99 |
Q |
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| T |
25579961 |
ggagttatgatgtatggatgtgaaatggcagacaatcatctcatttatccaacttctgtctctagaccagtcggag |
25580036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 9402674 - 9402728
Alignment:
| Q |
60 |
cacctcatgtatccagttgctatgtctagaccagtcggagcaagcagacctaaat |
114 |
Q |
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| T |
9402674 |
cacctcatgtatccggtttccatctctagaccagtcggagcacgcaaacctaaat |
9402728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 11152419 - 11152471
Alignment:
| Q |
23 |
cggagttatgatgtatgaatgtgaaatggcataaaaccacctcatgtatccag |
75 |
Q |
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| T |
11152419 |
cggagttatgatgtatgaatgtgaaatggcagaaaaccagatcatgtatccag |
11152471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 319
Target Start/End: Original strand, 24141589 - 24141734
Alignment:
| Q |
174 |
gatggtttggacacaaccaaactggcacaacacccgcccccacagatttcagacgttctgaggtccctatttgagccacccaaagtaaagactaattcgc |
273 |
Q |
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| T |
24141589 |
gatggtttggacgtaaccaaactggcacaacacccgctccagcagatatcggaccctgcgaggtccatatctgaggcatccaaaataaagactgattcgc |
24141688 |
T |
|
| Q |
274 |
acaaacaaacatgtctcgcagtggcaccgatacatgttcatgagaa |
319 |
Q |
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| T |
24141689 |
tcgaacggacatgtctggcggtggggctgatacaggttcatgagaa |
24141734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 33358411 - 33358374
Alignment:
| Q |
33 |
atgtatgaatgtgaaatggcataaaaccacctcatgta |
70 |
Q |
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| T |
33358411 |
atgtatggatgtgaaatggcataaaaccatctcatgta |
33358374 |
T |
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