View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4433_low_8 (Length: 339)
Name: NF4433_low_8
Description: NF4433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4433_low_8 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 27224740 - 27225063
Alignment:
| Q |
16 |
attttctcatctcaattctatgcggcaatccggggacaacgaattcatccgaatcggagagggtttcacaaaccatagaagcatgaatattgtgattaca |
115 |
Q |
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| T |
27224740 |
attttctcatctcaattctatgcggcaatccggggacaacgaattcatccgaatcggagagggtttcacaaaccatagaagcatgaatattgtgattaca |
27224839 |
T |
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| Q |
116 |
caatagggtgaaacaattcatcccatcaaatattattcttggaactttgaacttaattgaagtttcaactagacatggaatatgtttgtcacatatcatg |
215 |
Q |
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| T |
27224840 |
caatagggtgaaacaattcatcccatcaaatattattcttggaactttgaacttaattgatgtttcaactagacatggaatatgtttgtcacatatcatg |
27224939 |
T |
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| Q |
216 |
catgttggaaatggttccatcttttcaataatctcttctattggttgttgtaataagtctaaagctatgaggaaattttctctaaggtccattgaaggaa |
315 |
Q |
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| T |
27224940 |
catgttggaaatggttccatcttttcaataatctcttctattggttgttgtaataagtctaaagctatgaggaaattttctctaaggtccattgaaggaa |
27225039 |
T |
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| Q |
316 |
gtctttctatactttcacatccct |
339 |
Q |
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| T |
27225040 |
gtgtttctatactttcacatccct |
27225063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 339
Target Start/End: Original strand, 20157433 - 20157744
Alignment:
| Q |
28 |
caattctatgcggcaatccggggacaacgaattcatccgaatcggagagggtttcacaaaccatagaagcatgaatattgtgattacacaatagggtgaa |
127 |
Q |
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| T |
20157433 |
caattctatgtggcaatccagggataacaaattgatctgaatcatatagagtttcataaaccttagaagcatgaatattatggttgcataagaggtttaa |
20157532 |
T |
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| Q |
128 |
acaattcatcccatcaaatattattcttggaactttgaacttaattgaagtttcaactagacatggaatatgtttgtcacatatcatgcatgttggaaat |
227 |
Q |
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| T |
20157533 |
gcaattagtaccatcaaatatgattcttgggattttgaacttgttagctgtatcagctagagatggaatatgcttatcagatataatgcaacttggaaat |
20157632 |
T |
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| Q |
228 |
ggttccatcttttcaataatctcttctattggttgttgtaataagtctaaagctatgaggaaattttctctaaggtccattgaaggaagtctttctatac |
327 |
Q |
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| T |
20157633 |
ggttctagcttttgaataagctcttctattggcttctgcagaaggttaacagctattaagaaatttcctttgagatccattgaaggaagtgtttctaagc |
20157732 |
T |
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| Q |
328 |
tttcacatccct |
339 |
Q |
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|||||||||||| |
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| T |
20157733 |
tttcacatccct |
20157744 |
T |
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