View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4434-Insertion-2 (Length: 545)

Name: NF4434-Insertion-2
Description: NF4434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4434-Insertion-2
NF4434-Insertion-2
[»] chr1 (13 HSPs)
chr1 (157-413)||(3943548-3943804)
chr1 (157-414)||(41959594-41959851)
chr1 (157-414)||(9589416-9589673)
chr1 (157-367)||(13984447-13984657)
chr1 (285-414)||(44227847-44227976)
chr1 (375-415)||(3943058-3943098)
chr1 (375-414)||(9588669-9588708)
chr1 (375-413)||(284333-284371)
chr1 (375-413)||(23045518-23045556)
chr1 (375-413)||(41959078-41959116)
chr1 (496-545)||(18501570-18501619)
chr1 (375-412)||(27211203-27211240)
chr1 (381-413)||(24772150-24772182)
[»] chr3 (23 HSPs)
chr3 (157-413)||(44276775-44277031)
chr3 (157-414)||(19911959-19912216)
chr3 (158-413)||(12095209-12095464)
chr3 (209-414)||(38806178-38806383)
chr3 (204-348)||(4236415-4236566)
chr3 (204-367)||(4227369-4227538)
chr3 (493-545)||(13368680-13368732)
chr3 (419-460)||(17665708-17665749)
chr3 (375-415)||(12094580-12094620)
chr3 (375-414)||(3383075-3383114)
chr3 (375-414)||(29375137-29375176)
chr3 (375-413)||(198855-198893)
chr3 (375-413)||(36881282-36881320)
chr3 (375-413)||(38805245-38805283)
chr3 (375-416)||(13364840-13364881)
chr3 (375-416)||(19241665-19241706)
chr3 (381-414)||(19241913-19241946)
chr3 (375-416)||(29375371-29375412)
chr3 (412-452)||(13368773-13368813)
chr3 (494-538)||(15098876-15098920)
chr3 (493-545)||(17665783-17665835)
chr3 (385-417)||(27010470-27010502)
chr3 (375-415)||(43750135-43750175)
[»] chr8 (17 HSPs)
chr8 (157-414)||(45278012-45278268)
chr8 (157-414)||(41305761-41306018)
chr8 (157-367)||(10647079-10647289)
chr8 (375-416)||(40918968-40919009)
chr8 (375-416)||(41307976-41308017)
chr8 (375-415)||(8697913-8697953)
chr8 (375-413)||(3585451-3585489)
chr8 (375-413)||(27034997-27035035)
chr8 (375-413)||(43275636-43275674)
chr8 (375-413)||(45278716-45278754)
chr8 (375-416)||(36068319-36068360)
chr8 (381-413)||(20546532-20546564)
chr8 (494-538)||(26864922-26864966)
chr8 (381-413)||(36068080-36068112)
chr8 (381-413)||(37345571-37345603)
chr8 (382-414)||(40058549-40058581)
chr8 (381-413)||(40486474-40486506)
[»] chr6 (10 HSPs)
chr6 (157-416)||(19996319-19996578)
chr6 (493-545)||(20516402-20516454)
chr6 (412-460)||(20516324-20516372)
chr6 (375-414)||(15064933-15064972)
chr6 (375-415)||(1605577-1605617)
chr6 (375-415)||(7761299-7761339)
chr6 (375-415)||(29260190-29260230)
chr6 (375-416)||(17942440-17942481)
chr6 (381-413)||(8626482-8626514)
chr6 (385-417)||(18668922-18668954)
[»] chr7 (10 HSPs)
chr7 (157-407)||(25059456-25059706)
chr7 (157-417)||(2910855-2911115)
chr7 (375-415)||(10981506-10981546)
chr7 (375-414)||(25060148-25060187)
chr7 (375-414)||(27813810-27813849)
chr7 (375-416)||(27814050-27814091)
chr7 (375-415)||(2911563-2911603)
chr7 (494-538)||(27285179-27285223)
chr7 (375-411)||(36453363-36453399)
chr7 (375-415)||(40349200-40349240)
[»] chr5 (16 HSPs)
chr5 (157-415)||(15304820-15305078)
chr5 (493-545)||(20032128-20032180)
chr5 (493-545)||(17937204-17937256)
chr5 (493-545)||(32668251-32668303)
chr5 (497-545)||(36518427-36518475)
chr5 (413-454)||(17937294-17937335)
chr5 (415-460)||(32668175-32668220)
chr5 (412-454)||(20032049-20032091)
chr5 (494-545)||(17005631-17005682)
chr5 (375-418)||(30720487-30720530)
chr5 (498-533)||(31311518-31311553)
chr5 (375-413)||(12807092-12807130)
chr5 (375-413)||(15305227-15305265)
chr5 (375-413)||(25773649-25773687)
chr5 (375-413)||(30720731-30720769)
chr5 (375-419)||(10285296-10285340)
[»] scaffold0257 (2 HSPs)
scaffold0257 (157-413)||(23657-23913)
scaffold0257 (375-413)||(23467-23505)
[»] chr2 (9 HSPs)
chr2 (157-413)||(34222058-34222314)
chr2 (375-414)||(3518907-3518946)
chr2 (375-414)||(12969978-12970017)
chr2 (498-533)||(22840051-22840086)
chr2 (375-413)||(1102503-1102541)
chr2 (375-413)||(34224393-34224431)
chr2 (375-416)||(22388135-22388176)
chr2 (375-412)||(23366790-23366827)
chr2 (385-413)||(8042022-8042050)
[»] chr4 (13 HSPs)
chr4 (202-406)||(19362019-19362223)
chr4 (210-367)||(20543325-20543482)
chr4 (117-159)||(19361898-19361940)
chr4 (117-157)||(20543126-20543166)
chr4 (375-414)||(12071560-12071599)
chr4 (375-414)||(14261043-14261082)
chr4 (375-414)||(21310424-21310463)
chr4 (375-414)||(25704650-25704689)
chr4 (375-414)||(40122724-40122763)
chr4 (375-413)||(34324822-34324860)
chr4 (375-416)||(21310660-21310701)
chr4 (385-418)||(47386520-47386553)
chr4 (494-538)||(37942719-37942763)
[»] scaffold0089 (2 HSPs)
scaffold0089 (493-542)||(37425-37474)
scaffold0089 (412-460)||(37347-37395)
[»] scaffold1431 (1 HSPs)
scaffold1431 (375-416)||(138-179)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 157 - 413
Target Start/End: Original strand, 3943548 - 3943804
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  3943548 gagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttat 3943647  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  3943648 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 3943747  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagta 413  Q
    |||||||||||       ||||||||||||||||| |||||||||||||||||||||    
T  3943748 tattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 157 - 414
Target Start/End: Original strand, 41959594 - 41959851
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||| |||||| ||||||||||  ||||||||||| ||||||||||||    
T  41959594 gagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttggaagagtgtatgagtaaatctacttaaaattgagtcaacatttat 41959693  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  41959694 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 41959793  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    |||||||||||       ||||||||||||||||| ||||||||||||||||||||||    
T  41959794 tattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagtat 41959851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 157 - 414
Target Start/End: Original strand, 9589416 - 9589673
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||    
T  9589416 gagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcaggagtaaatctacttaaaattaggtcaacatttat 9589515  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| | |||    
T  9589516 tagtggaaaataattattgtggagaaaatctagaattcaattaattggtagacaagggtaaaatagacaaaatgcatacttaaactatgaaatggatatg 9589615  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    |||||||||||       ||||||||||| ||||| ||||||||||||||||||||||    
T  9589616 tattttgaaacaaaaaatttctctaaaatagacatgtattttgaaacggagggagtat 9589673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 157 - 367
Target Start/End: Complemental strand, 13984657 - 13984447
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  13984657 gagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattggatcaacatttat 13984558  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||    
T  13984557 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaacatgtatccttaaactatgaaatggatatg 13984458  T
Q  357 tattttgaaac 367  Q
    |||||||||||    
T  13984457 tattttgaaac 13984447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 285 - 414
Target Start/End: Complemental strand, 44227976 - 44227847
Alignment:
Q  285 tctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatgtattttgaaacnnnnnnnttctctaaaa 384  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||       ||||| ||||    
T  44227976 tctagaatccaattagttggtatacaagggtaaaatagacaaaatgtatccttaaactatcaaaatgacatgcattttgaaacaaaaaatttctccaaaa 44227877  T
Q  385 tggacatatattttgaaacggagggagtat 414  Q
    ||||||| ||||||||||||||||||||||    
T  44227876 tggacatgtattttgaaacggagggagtat 44227847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 3943098 - 3943058
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  3943098 ttctccaaaatggacatgtattttgaaacggagggagtata 3943058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 9588708 - 9588669
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  9588708 ttctccaaaatggacatgtattttgaaacggagggagtat 9588669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 284371 - 284333
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  284371 ttctccaaaatggacatgtattttgaaacggagggagta 284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 23045518 - 23045556
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  23045518 ttctccaaaatggacatgtattttgaaacggagggagta 23045556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 41959116 - 41959078
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  41959116 ttctccaaaatggacatgtattttgaaacggagggagta 41959078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 545
Target Start/End: Complemental strand, 18501619 - 18501570
Alignment:
Q  496 gcaacttttattagcgctttcagtaaaatgctaagaaacccctatttgag 545  Q
    |||||||||||||||||||||| ||||| || ||||| ||||||| ||||    
T  18501619 gcaacttttattagcgctttcaataaaacgcgaagaatcccctatatgag 18501570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 412
Target Start/End: Original strand, 27211203 - 27211240
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagt 412  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  27211203 ttctccaaaatggacatgtattttgaaacggagggagt 27211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 24772150 - 24772182
Alignment:
Q  381 aaaatggacatatattttgaaacggagggagta 413  Q
    ||||||||||| |||||||||||||||||||||    
T  24772150 aaaatggacatgtattttgaaacggagggagta 24772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 157 - 413
Target Start/End: Complemental strand, 44277031 - 44276775
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44277031 gagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttat 44276932  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  44276931 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 44276832  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagta 413  Q
    |||||||||||       ||||||||||||||||| ||||||||||||||| |||||    
T  44276831 tattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagagagta 44276775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 157 - 414
Target Start/End: Original strand, 19911959 - 19912216
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||| ||| ||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||    
T  19911959 gagtagttaattacgatggattagagtgcagtagtcatgggaaaataatttcttggaagagtgcatgagtaaatctacttaaaattgggtcaacatttat 19912058  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  19912059 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 19912158  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    |||||||||||       ||||||||||||||||| ||||||||||||||||||||||    
T  19912159 tattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagtat 19912216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 158 - 413
Target Start/End: Original strand, 12095209 - 12095464
Alignment:
Q  158 agtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttatt 257  Q
    |||||||||||| ||| ||||| |||  ||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  12095209 agtagttagttacgatagattagagtggagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtctacatttatt 12095308  T
Q  258 agtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatgt 357  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||    
T  12095309 agtggaaaataattattgtgaagaaaatctagaatccaattaattggtagacaagggtaaaatagataaaatgcatccttaaactatgaaatggacatgt 12095408  T
Q  358 attttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  12095409 attttgaaacaaaaaatttctctaaaatggacatatattttgaaacggagggagta 12095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 209 - 414
Target Start/End: Original strand, 38806178 - 38806383
Alignment:
Q  209 ttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtaga 308  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38806178 ttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattatggagaaaatctagaatccaattaattggtaga 38806277  T
Q  309 caagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatgtattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagg 408  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||       ||||||||||||||||| ||||||||||||||||    
T  38806278 caagggtaaaatagacaaaatgtatccttaaactatgaaatagacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagg 38806377  T
Q  409 gagtat 414  Q
    ||||||    
T  38806378 gagtat 38806383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 204 - 348
Target Start/End: Original strand, 4236415 - 4236566
Alignment:
Q  204 atttcttgggagagtgcatgagtaaattcacttaaaattgggtcaaca-------tttattagtggaaaataattattgtggagaaaatctagaatccaa 296  Q
    ||||||||||||||||||||| ||||| |||||||||||||  |||||       |||||||||||||||||||||||||||||||||| ||||||||||    
T  4236415 atttcttgggagagtgcatgaataaatccacttaaaattggaccaacacattatatttattagtggaaaataattattgtggagaaaatttagaatccaa 4236514  T
Q  297 ttaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaa 348  Q
    |||||||  || ||||||||||||| | ||||||||||||||||||||||||    
T  4236515 ttaattgcaaggcaagggtaaaatatataaaatgtatccttaaactatcaaa 4236566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 204 - 367
Target Start/End: Original strand, 4227369 - 4227538
Alignment:
Q  204 atttcttgggagagtgcatgagtaaattcacttaaaattgggtcaaca-------tttattagtggaaaataattattgtggagaaaatctagaatccaa 296  Q
    ||||||||||||| ||||||| ||||| |||||||||||||  |||||       |||||||||||||||||||||||||||||||||| ||||||||||    
T  4227369 atttcttgggagactgcatgaataaatccacttaaaattggaccaacacattatatttattagtggaaaataattattgtggagaaaatttagaatccaa 4227468  T
Q  297 ttaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatgtattttgaaac 367  Q
    |||||| |||| ||||||||||||| |||||||||||||||||| |||||||   ||||||||||| ||||    
T  4227469 ttaatt-gtaggcaagggtaaaatatacaaaatgtatccttaaattatcaaaaatacatgtatttttaaac 4227538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 493 - 545
Target Start/End: Complemental strand, 13368732 - 13368680
Alignment:
Q  493 tacgcaacttttattagcgctttcagtaaaatgctaagaaacccctatttgag 545  Q
    ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  13368732 tacgcaacttttattagcgctttcaataaaacgctaagaaatccctatttgag 13368680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 460
Target Start/End: Original strand, 17665708 - 17665749
Alignment:
Q  419 atatttcagtatcttattattgcgtttaattatagcattttt 460  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  17665708 atatttcagtatcttattatagcgtttaattatagcattttt 17665749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 12094620 - 12094580
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  12094620 ttctccaaaatggacatgtattttgaaacggagggagtata 12094580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 3383114 - 3383075
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  3383114 ttctccaaaatggacatatattttgaaacggaaggagtat 3383075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 29375176 - 29375137
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  29375176 ttctccaaaatggacatgtattttgaaacggagggagtat 29375137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 198893 - 198855
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  198893 ttctccaaaatggacatgtattttgaaacggagggagta 198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 36881320 - 36881282
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  36881320 ttctccaaaatggacatgtattttgaaacggagggagta 36881282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 38805283 - 38805245
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  38805283 ttctctaaaatggacatgtattttaaaacggagggagta 38805245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 13364881 - 13364840
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||| |||||| |||| ||||||||||||||||||||||||    
T  13364881 ttctccaaaatgaacatgtattttgaaacggagggagtatat 13364840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 19241706 - 19241665
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  19241706 ttctctaaaatggacaagtattatgaaacggagggagtatat 19241665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Original strand, 19241913 - 19241946
Alignment:
Q  381 aaaatggacatatattttgaaacggagggagtat 414  Q
    ||||||||||| ||||||||||||||||||||||    
T  19241913 aaaatggacatgtattttgaaacggagggagtat 19241946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 29375371 - 29375412
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  29375371 ttctctaaaatggacaagtattatgaaacggagggagtatat 29375412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 13368813 - 13368773
Alignment:
Q  412 tatattcatatttcagtatcttattattgcgtttaattata 452  Q
    ||||||||||||||| ||||||||| | |||||||||||||    
T  13368813 tatattcatatttcattatcttattctagcgtttaattata 13368773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 538
Target Start/End: Complemental strand, 15098920 - 15098876
Alignment:
Q  494 acgcaacttttattagcgctttcagtaaaatgctaagaaacccct 538  Q
    |||| ||||||||||||||||||| ||||| |||||||| |||||    
T  15098920 acgctacttttattagcgctttcaataaaacgctaagaatcccct 15098876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 545
Target Start/End: Original strand, 17665783 - 17665835
Alignment:
Q  493 tacgcaacttttattagcgctttcagtaaaatgctaagaaacccctatttgag 545  Q
    |||||||||||||||| | |||||| ||||| |||||||| |||| |||||||    
T  17665783 tacgcaacttttattaacactttcaataaaacgctaagaatccccaatttgag 17665835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 27010502 - 27010470
Alignment:
Q  385 tggacatatattttgaaacggagggagtatatt 417  Q
    ||||||| |||||||||||||||||||||||||    
T  27010502 tggacatgtattttgaaacggagggagtatatt 27010470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 43750175 - 43750135
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  43750175 ttctccaaaatggacatgtattttgaaacgaagggagtata 43750135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 157 - 414
Target Start/End: Complemental strand, 45278268 - 45278012
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  45278268 gagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttat 45278169  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  45278168 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 45278069  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    |||||||||||       ||||||||||||||||| ||||||||||| ||||||||||    
T  45278068 tattttgaaacaaaaaatttctctaaaatggacatgtattttgaaac-gagggagtat 45278012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 157 - 414
Target Start/End: Complemental strand, 41306018 - 41305761
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  41306018 gagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttaggagagtgcatgagtaaatctacttaaaattgggtcaacatttat 41305919  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  41305918 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatatatccttaaactatgaaatggacatg 41305819  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    |||||||||||       ||||||||||||||||| ||||||||||||||| ||||||    
T  41305818 tattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagagagtat 41305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 157 - 367
Target Start/End: Original strand, 10647079 - 10647289
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  10647079 gagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttaggagagtgcatgagtaaatctacttaaaattgggtcaacatttat 10647178  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  10647179 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 10647278  T
Q  357 tattttgaaac 367  Q
    |||||||||||    
T  10647279 tattttgaaac 10647289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 40918968 - 40919009
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  40918968 ttctccaaaatggacatgtattttgaaacggagggagtatat 40919009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 41307976 - 41308017
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  41307976 ttctccaaaatggacatgtattttgaaacggagggagtatat 41308017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 8697913 - 8697953
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  8697913 ttctccaaaatggacatgtattttgaaacggagggagtata 8697953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 3585489 - 3585451
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  3585489 ttctccaaaatggacatgtattttgaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 27035035 - 27034997
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  27035035 ttctccaaaatggacatgtattttgaaacggagggagta 27034997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 43275636 - 43275674
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  43275636 ttctccaaaatggacatgtattttgaaacggagggagta 43275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 45278716 - 45278754
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  45278716 ttctccaaaatggacatgtattttgaaacggagggagta 45278754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 36068319 - 36068360
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  36068319 ttctctaaaatggacaagtattatgaaacggagggagtatat 36068360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 20546532 - 20546564
Alignment:
Q  381 aaaatggacatatattttgaaacggagggagta 413  Q
    |||||||||||||||||||||| ||||||||||    
T  20546532 aaaatggacatatattttgaaatggagggagta 20546564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 538
Target Start/End: Original strand, 26864922 - 26864966
Alignment:
Q  494 acgcaacttttattagcgctttcagtaaaatgctaagaaacccct 538  Q
    |||| ||||||||||||||||||| ||||| |||||||| |||||    
T  26864922 acgctacttttattagcgctttcaataaaacgctaagaatcccct 26864966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 36068112 - 36068080
Alignment:
Q  381 aaaatggacatatattttgaaacggagggagta 413  Q
    ||||||||||| |||||||||||||||||||||    
T  36068112 aaaatggacatgtattttgaaacggagggagta 36068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 37345603 - 37345571
Alignment:
Q  381 aaaatggacatatattttgaaacggagggagta 413  Q
    ||||||||||| |||||||||||||||||||||    
T  37345603 aaaatggacatgtattttgaaacggagggagta 37345571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 40058549 - 40058581
Alignment:
Q  382 aaatggacatatattttgaaacggagggagtat 414  Q
    |||||||||| ||||||||||||||||||||||    
T  40058549 aaatggacatgtattttgaaacggagggagtat 40058581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 40486474 - 40486506
Alignment:
Q  381 aaaatggacatatattttgaaacggagggagta 413  Q
    ||||||||||| |||||||||||||||||||||    
T  40486474 aaaatggacatgtattttgaaacggagggagta 40486506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 157 - 416
Target Start/End: Complemental strand, 19996578 - 19996319
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    |||| |||||||| ||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  19996578 gagtggttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaatatttat 19996479  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  19996478 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 19996379  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    |||||||||||       ||||||||||||||||| ||||||||||||||||||||||||    
T  19996378 tattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagtatat 19996319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 493 - 545
Target Start/End: Original strand, 20516402 - 20516454
Alignment:
Q  493 tacgcaacttttattagcgctttcagtaaaatgctaagaaacccctatttgag 545  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  20516402 tacgcaacttttattagcgctttcaataaaacgctaagaaacccctatttgag 20516454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 460
Target Start/End: Original strand, 20516324 - 20516372
Alignment:
Q  412 tatattcatatttcagtatcttattattgcgtttaattatagcattttt 460  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  20516324 tatattcatatttcagtatcttattatagcgtttaattatagccttttt 20516372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 15064933 - 15064972
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  15064933 ttctctaaaatggacatgtattttgaaacggagggagtat 15064972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 1605617 - 1605577
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  1605617 ttctccaaaatggacatgtattttgaaacggagggagtata 1605577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 7761339 - 7761299
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  7761339 ttctccaaaatggacatgtattttgaaacggagggagtata 7761299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 29260230 - 29260190
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  29260230 ttctccaaaatggacatgtattttgaaacggagggagtata 29260190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 17942481 - 17942440
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||| ||||||||||| |||||||||||| |||||||||||    
T  17942481 ttctcaaaaatggacatgtattttgaaacgaagggagtatat 17942440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 8626514 - 8626482
Alignment:
Q  381 aaaatggacatatattttgaaacggagggagta 413  Q
    ||||||||||| |||||||||||||||||||||    
T  8626514 aaaatggacatgtattttgaaacggagggagta 8626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 18668922 - 18668954
Alignment:
Q  385 tggacatatattttgaaacggagggagtatatt 417  Q
    ||||||| |||||||||||||||||||||||||    
T  18668922 tggacatgtattttgaaacggagggagtatatt 18668954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 157 - 407
Target Start/End: Complemental strand, 25059706 - 25059456
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  25059706 gagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctgcttaaaattgggtcaacatttat 25059607  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  25059606 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 25059507  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggag 407  Q
    |||||||||||       ||||||||||||||||| |||||||||||||||    
T  25059506 tattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggag 25059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 157 - 417
Target Start/End: Complemental strand, 2911115 - 2910855
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| |||| |||| ||| |||| ||||| |||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||    
T  2911115 gagtagttagttacgatgaattaaagtgcagtagtcattggaaaataattttttggaagagtgcatgagtaaatctacttaaaattgggtcaacatttat 2911016  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  2911015 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 2910916  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagtatatt 417  Q
    |||||||||||       |||| |||||| ||||| |||||||||||||||||||||||||    
T  2910915 tattttgaaacaaaaaatttctttaaaatagacatgtattttgaaacggagggagtatatt 2910855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 10981546 - 10981506
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  10981546 ttctccaaaatggacatgtattttgaaacggagggagtata 10981506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 25060148 - 25060187
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  25060148 ttctccaaaatggacatgtattttgaaacggagggagtat 25060187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 27813849 - 27813810
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  27813849 ttctccaaaatggacatgtattttgaaacggagggagtat 27813810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 27814050 - 27814091
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  27814050 ttctctaaaatggacaagtattatgaaacggagggagtatat 27814091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 2911563 - 2911603
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    ||||| ||||||||||| |||||||||| ||||||||||||    
T  2911563 ttctccaaaatggacatgtattttgaaatggagggagtata 2911603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 538
Target Start/End: Complemental strand, 27285223 - 27285179
Alignment:
Q  494 acgcaacttttattagcgctttcagtaaaatgctaagaaacccct 538  Q
    |||| ||||||||||||||||||| ||||| |||||||| |||||    
T  27285223 acgctacttttattagcgctttcaataaaacgctaagaatcccct 27285179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 36453363 - 36453399
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggag 411  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  36453363 ttctccaaaatggacatgtattttgaaacggagggag 36453399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 40349200 - 40349240
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    ||||||||||||||||  |||| ||||||||||||||||||    
T  40349200 ttctctaaaatggacaagtattatgaaacggagggagtata 40349240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 157 - 415
Target Start/End: Complemental strand, 15305078 - 15304820
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  15305078 gagtagttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttat 15304979  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  15304978 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagataagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 15304879  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagtata 415  Q
    |||||||||||       ||||||||||||||||| |||||| ||||||||||||||||    
T  15304878 tattttgaaacaaaaaatttctctaaaatggacatgtattttaaaacggagggagtata 15304820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 493 - 545
Target Start/End: Original strand, 20032128 - 20032180
Alignment:
Q  493 tacgcaacttttattagcgctttcagtaaaatgctaagaaacccctatttgag 545  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20032128 tacgcaacttttattagcgctttcagtaaaacgctaagaaacccctatttgag 20032180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 493 - 545
Target Start/End: Complemental strand, 17937256 - 17937204
Alignment:
Q  493 tacgcaacttttattagcgctttcagtaaaatgctaagaaacccctatttgag 545  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  17937256 tacgcaacttttattagcgctttcagtaaaacgctaagtaacccctatttgag 17937204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 493 - 545
Target Start/End: Original strand, 32668251 - 32668303
Alignment:
Q  493 tacgcaacttttattagcgctttcagtaaaatgctaagaaacccctatttgag 545  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  32668251 tacgcaacttttattagcgctttcaataaaacgctaagaaacccctatttgag 32668303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 36518427 - 36518475
Alignment:
Q  497 caacttttattagcgctttcagtaaaatgctaagaaacccctatttgag 545  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36518427 caacttttattagcgctttcagtaaaacgctaagaaacccctatttgag 36518475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 17937335 - 17937294
Alignment:
Q  413 atattcatatttcagtatcttattattgcgtttaattatagc 454  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  17937335 atattcatatttcagtatcttattatagcgtttaattatagc 17937294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 460
Target Start/End: Original strand, 32668175 - 32668220
Alignment:
Q  415 attcatatttcagtatcttattattgcgtttaattatagcattttt 460  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  32668175 attcatatttcagtatcttattatagcgtttaattatagccttttt 32668220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 454
Target Start/End: Original strand, 20032049 - 20032091
Alignment:
Q  412 tatattcatatttcagtatcttattattgcgtttaattatagc 454  Q
    ||||||||||||||||||||||||||| || ||||||||||||    
T  20032049 tatattcatatttcagtatcttattatagcatttaattatagc 20032091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 545
Target Start/End: Complemental strand, 17005682 - 17005631
Alignment:
Q  494 acgcaacttttattagcgctttcagtaaaatgctaagaaacccctatttgag 545  Q
    |||| ||||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  17005682 acgctacttttattagcgctttcaataaaacgctaagaatcccctgtttgag 17005631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Complemental strand, 30720530 - 30720487
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatattc 418  Q
    ||||||||||||||||  |||| |||||||||||||||||||||    
T  30720530 ttctctaaaatggacaagtattatgaaacggagggagtatattc 30720487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 533
Target Start/End: Original strand, 31311518 - 31311553
Alignment:
Q  498 aacttttattagcgctttcagtaaaatgctaagaaa 533  Q
    |||||||||||||||||||||||||| |||||||||    
T  31311518 aacttttattagcgctttcagtaaaacgctaagaaa 31311553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 12807092 - 12807130
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  12807092 ttctccaaaatggacatgtattttgaaacggagggagta 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 15305227 - 15305265
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  15305227 ttctccaaaatggacatgtattttgaaacggagggagta 15305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 25773687 - 25773649
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  25773687 ttctccaaaatggacatgtattttgaaacggagggagta 25773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 30720731 - 30720769
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  30720731 ttctccaaaatggacatgtattttgaaacggagggagta 30720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 10285296 - 10285340
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatattca 419  Q
    ||||| ||||| ||||| |||||||||||||||||||||| ||||    
T  10285296 ttctccaaaatagacatctattttgaaacggagggagtattttca 10285340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 157 - 413
Target Start/End: Original strand, 23657 - 23913
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    |||| |||||||| ||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  23657 gagtggttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaatatttat 23756  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  23757 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatg 23856  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagta 413  Q
    |||||||||||       ||||||||||||||||| |||||||||||||| ||||||    
T  23857 tattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggatggagta 23913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 23505 - 23467
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  23505 ttctccaaaatggacatgtattttgaaacggagggagta 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 4e-92; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 157 - 413
Target Start/End: Complemental strand, 34222314 - 34222058
Alignment:
Q  157 gagtagttagttaagatggattacagtccagtcgtcatgggaaaataatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttat 256  Q
    ||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  34222314 gagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttat 34222215  T
Q  257 tagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatg 356  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||    
T  34222214 tagtggaaaataattattgtggagaaaatctaaaattcaattaattgatagacaagggtaaaatagacaaaatgtatccttaaattatgaaatggacatg 34222115  T
Q  357 tattttgaaacnnnnnnnttctctaaaatggacatatattttgaaacggagggagta 413  Q
    |||||||||||       |||| |||||||||||| |||||| ||||||| ||||||    
T  34222114 tattttgaaacaaaaaatttctataaaatggacatgtattttaaaacggaaggagta 34222058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 3518946 - 3518907
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  3518946 ttctccaaaatggacatgtattttgaaacggagggagtat 3518907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 12969978 - 12970017
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  12969978 ttctccaaaatggacatgtattttgaaacggagggagtat 12970017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 533
Target Start/End: Original strand, 22840051 - 22840086
Alignment:
Q  498 aacttttattagcgctttcagtaaaatgctaagaaa 533  Q
    |||||||||||||||||||||||||| |||||||||    
T  22840051 aacttttattagcgctttcagtaaaacgctaagaaa 22840086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 1102541 - 1102503
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  1102541 ttctccaaaatggacatgtattttgaaacggagggagta 1102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 34224393 - 34224431
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  34224393 ttctccaaaatggacatgtattttgaaacggagggagta 34224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 22388176 - 22388135
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  22388176 ttctctaaaatggacaagtattatgaaacggagggagtatat 22388135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 412
Target Start/End: Complemental strand, 23366827 - 23366790
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagt 412  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  23366827 ttctccaaaatggacatgtattttgaaacggagggagt 23366790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 413
Target Start/End: Complemental strand, 8042050 - 8042022
Alignment:
Q  385 tggacatatattttgaaacggagggagta 413  Q
    |||||||||||||||||||||||||||||    
T  8042050 tggacatatattttgaaacggagggagta 8042022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 6e-66; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 202 - 406
Target Start/End: Original strand, 19362019 - 19362223
Alignment:
Q  202 taatttcttgggagagtgcatgagtaaattcacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaat 301  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||||| |||||| ||||||||||||||||||    
T  19362019 taatttctagggagagtgcatgagtaaatccacttaaaattgggtcaacatttactggtgtaaaataattattgaggagaacatctagaatccaattaat 19362118  T
Q  302 tggtagacaagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatgtattttgaaacnnnnnnnttctctaaaatggacatatattttgaa 401  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||||  |||       ||||||||||||||||| |||||||||    
T  19362119 tggtagacaatggtaaaatagacaaaatgtatccttaaactatcaaaatgacatgtattttacaacaaaaaatttctctaaaatggacatgtattttgaa 19362218  T
Q  402 acgga 406  Q
    |||||    
T  19362219 acgga 19362223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 210 - 367
Target Start/End: Original strand, 20543325 - 20543482
Alignment:
Q  210 tgggagagtgcatgagtaaattcacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagac 309  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  20543325 tgggaaagtgcatgagtaaatccacttaaaattgggtcaacatttattaatggaaaataattattatggagaaaatctagaatccaattaattggtaggc 20543424  T
Q  310 aagggtaaaatagacaaaatgtatccttaaactatcaaatgaacatgtattttgaaac 367  Q
    ||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||    
T  20543425 aagggtagaatagacaaaatgtatccttaaactatcaaaatgacatgtattttgaaac 20543482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 19361898 - 19361940
Alignment:
Q  117 tagttttaattataaatttgtcatttttataagcaaattagag 159  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  19361898 tagttttaattataaatttgtcatttttataagcatattagag 19361940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 20543126 - 20543166
Alignment:
Q  117 tagttttaattataaatttgtcatttttataagcaaattag 157  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  20543126 tagttttaattataaaattgtcatatttataagcaaattag 20543166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 12071599 - 12071560
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  12071599 ttctccaaaatggacatgtattttgaaacggagggagtat 12071560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 14261082 - 14261043
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  14261082 ttctccaaaatggacatgtattttgaaacggagggagtat 14261043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 21310463 - 21310424
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  21310463 ttctccaaaatggacatgtattttgaaacggagggagtat 21310424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 25704689 - 25704650
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  25704689 ttctccaaaatggacatgtattttgaaacggagggagtat 25704650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 40122724 - 40122763
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtat 414  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  40122724 ttctccaaaatggacatgtattttgaaacggagggagtat 40122763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 34324822 - 34324860
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagta 413  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  34324822 ttctccaaaatggacatgtattttgaaacggagggagta 34324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 21310660 - 21310701
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  21310660 ttctctaaaatggacaagtattatgaaacggagggagtatat 21310701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Original strand, 47386520 - 47386553
Alignment:
Q  385 tggacatatattttgaaacggagggagtatattc 418  Q
    ||||||| ||||||||||||||||||||||||||    
T  47386520 tggacatgtattttgaaacggagggagtatattc 47386553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 538
Target Start/End: Original strand, 37942719 - 37942763
Alignment:
Q  494 acgcaacttttattagcgctttcagtaaaatgctaagaaacccct 538  Q
    |||| ||||||||||||||||||| ||||| |||||||| |||||    
T  37942719 acgctacttttattagcgctttcaataaaacgctaagaatcccct 37942763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 493 - 542
Target Start/End: Original strand, 37425 - 37474
Alignment:
Q  493 tacgcaacttttattagcgctttcagtaaaatgctaagaaacccctattt 542  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  37425 tacgcaacttttattagcgctttcaataaaacgctaagaaacccctattt 37474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 460
Target Start/End: Original strand, 37347 - 37395
Alignment:
Q  412 tatattcatatttcagtatcttattattgcgtttaattatagcattttt 460  Q
    ||||||||||||| |||||||||||||  |||||||||||||| |||||    
T  37347 tatattcatattttagtatcttattataacgtttaattatagccttttt 37395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 138 - 179
Alignment:
Q  375 ttctctaaaatggacatatattttgaaacggagggagtatat 416  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||    
T  138 ttctccaaaatggacatgtattttgaaacggagagagtatat 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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