View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4434_high_7 (Length: 254)
Name: NF4434_high_7
Description: NF4434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4434_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 32702198 - 32701961
Alignment:
| Q |
18 |
aaagatactgggcagacaagattgttactcaatattgcccttagtatatagaaggaaggttgaatagacacacaagagtttttggaatgggaatgcattt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
32702198 |
aaagatactgggcagacaagattgttactcaatatggcccttagtatatagaaggaaggttgaatagacacacaagagtttgtggaatggaaatgcattt |
32702099 |
T |
|
| Q |
118 |
tctaagattcttttcaagttaattccttattgaacttaatgtagg-nnnnnnnncctcacaatgaatgcaaatcacgtatatattaag--tatatattaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32702098 |
tctaagattcttttcaagttaattccttattgaacttaatgtaggaaaaaaaaacctcacaatgaatgcaaatcacgtatatattaagtatatatattaa |
32701999 |
T |
|
| Q |
215 |
gaatgaaactttataattcatgataggtttctctgctc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32701998 |
gaatgaaactttataattcatgataggtttctctgctc |
32701961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University