View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4434_low_10 (Length: 232)
Name: NF4434_low_10
Description: NF4434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4434_low_10 |
 | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0408 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 8372 - 8563
Alignment:
| Q |
24 |
acccaaacctgccttactcaacttctcattacccttatggatacacgaacacgatttcacctatttcatcaccaaatccataccccaacagcaacttcca |
123 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
8372 |
acccaaacctgcctgactcgacttcttattacccttatggatacacaaacaccatttcacctatttcatcaccaaatccataccccaacattaaattcca |
8471 |
T |
|
| Q |
124 |
acaacaaccttcacaaccaaaccaatactctaacccatacacgtacacatacacaaaccacaacaactgcaacacccaacctcaatattctt |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
8472 |
acaacaacctccacaaccaaaccaatactctaacccatacacgtacacatacacaaaccacaacaactgcaacacctaacctcaatactctt |
8563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 14098029 - 14098220
Alignment:
| Q |
24 |
acccaaacctgccttactcaacttctcattacccttatggatacacgaacacgatttcacctatttcatcaccaaatccataccccaacagcaacttcca |
123 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
14098029 |
acccaaacctgcctgactcgacttcttattacccttatggatacacaaacaccatttcacctatttcatcaccaaatccataccccaacattaaattcca |
14098128 |
T |
|
| Q |
124 |
acaacaaccttcacaaccaaaccaatactctaacccatacacgtacacatacacaaaccacaacaactgcaacacccaacctcaatattctt |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
14098129 |
acaacaacctccacaaccaaaccaatactctaacccatacacgtacacatacacaaaccacaacaactgcaacacctaacctcaatactctt |
14098220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University