View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4434_low_2 (Length: 332)
Name: NF4434_low_2
Description: NF4434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4434_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 30853227 - 30853437
Alignment:
| Q |
9 |
atgagatgaaagaagttgagttggactttacgnnnnnnnaattttgagaaaagaccacccataaatttagaataatcttatgt-gacaacatgagtttcc |
107 |
Q |
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| T |
30853227 |
atgaaatgaaagaagttgagttggactatacgtttttttaattttgagaaaagaccgcccataaatttagaataatcttatgttgacaacatgagtttcc |
30853326 |
T |
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| Q |
108 |
atgactcgtcttttgtgagtgagtcaagaaaatacaatatatcttcatatcattcaatcttgtaactcttggggtttcatcccttgtctttgacccatac |
207 |
Q |
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| T |
30853327 |
atgactcgtcttttgtgagtgagtcaagaaaatacaatata-cttcatatcattcaatcttgtaactcttggggtttcatcccttgtctttgagccatac |
30853425 |
T |
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| Q |
208 |
ccgtcgtttgat |
219 |
Q |
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| T |
30853426 |
ccgtcgtttgat |
30853437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 30853447 - 30853480
Alignment:
| Q |
281 |
ttttatatatatgtcatcaatttatctcagacca |
314 |
Q |
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| T |
30853447 |
ttttatatatatgtcatcaatttatctcatacca |
30853480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 254
Target Start/End: Complemental strand, 15077187 - 15077024
Alignment:
| Q |
86 |
ttatgtgacaacatgagtttccatgactcgtcttttgtgagtgagtcaagaaaatacaatatatcttcatatcattcaatcttgtaactcttggg-gttt |
184 |
Q |
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| T |
15077187 |
ttatatgacaacatgagtttccataacttatcttttgtgagtgagtcaagaaaatgcaat----catcatatcaattaatcttgtagctctggggagttt |
15077092 |
T |
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| Q |
185 |
catcccttgtctttgacccatacccgtcgtttgataaatttaaatatgagaatagttatcaatactctaa |
254 |
Q |
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| T |
15077091 |
ca--cgttgtttttgatccacattcgtcgttcgataaatttaaacatgagaagtgttatcaatactctaa |
15077024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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