View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4434_low_4 (Length: 316)
Name: NF4434_low_4
Description: NF4434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4434_low_4 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 303
Target Start/End: Original strand, 54302609 - 54302904
Alignment:
| Q |
6 |
aactcattcccaaattcctttttggtgttaaccttgatgaagatttaattttcatttcacaacaaaaagtttctggcttgcttgttgcatttacaggggt |
105 |
Q |
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| T |
54302609 |
aactcattcccaaattcctttttggtgttaaccttgatgaagatttaattttcatttcacaacaaaaagtttctggcttgcttgttgcatttacaggagt |
54302708 |
T |
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| Q |
106 |
agactttcgtcattaactcgcagcgattcgcgtcattcaatggcttaccagaaaacactaaaggaattattgttcttgaaagatcaaacatattactacc |
205 |
Q |
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| T |
54302709 |
agactttcgtcattaactcgcagcgattcg--tcattcaatggcttaccagaaaacaccaaaggaattattgttcttgtaagatcaaacatattactacc |
54302806 |
T |
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| Q |
206 |
aacgcaacttgcattgaaaaacaagcttccacctaaattcctctctttgtttgccttcttcaaacaaacaaggattcactaaattacttgttggattc |
303 |
Q |
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| T |
54302807 |
aacacaacttgcattgaaaaacaagcttccacctaaattcctctctttgtttgccttcttcaaacaaacaaagattcactaacttacttgttggattc |
54302904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 21268549 - 21268263
Alignment:
| Q |
16 |
caaattcctttttggtgttaaccttgatgaagatttaattttcatttcacaacaaaaagtttctggcttgct----tgttgcatttacaggggtagactt |
111 |
Q |
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| T |
21268549 |
caaattcatttttggtggtaaccttgatgaagatttgattttcatttcacaacaaaaagtttatggcttgctctcttgttgcattcacaggagtagactt |
21268450 |
T |
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| Q |
112 |
tcgtcattaactcgcagcgattcgcgtcattcaatggcttaccagaaaacactaaaggaattattgttcttgaaagatcaaacatattactaccaacgca |
211 |
Q |
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| T |
21268449 |
ccatcattaactggcagtgattca--taattcaatggcttaccaaaaaacaccaaaggaattattgttcttgcaagatcaaacctttcactaccaactca |
21268352 |
T |
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| Q |
212 |
acttgcattgaaaaacaagcttccacctaaattcctctctttgtttgccttcttcaaacaaacaaggattcactaaattacttgttggat |
301 |
Q |
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| T |
21268351 |
acttgcattgaaaaacaaggttcaacctagatt-ctctctttgtttgccttcttcaaacaaacaaggattcactaacttacttgttggat |
21268263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 7774875 - 7774588
Alignment:
| Q |
15 |
ccaaattcctttttggtgttaaccttgatgaagatttaattttcatttcacaacaaaaagtttctggcttgctt----gttgcatttacaggggtagact |
110 |
Q |
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| T |
7774875 |
ccaaattcatttttggtggtgaccttggtgaagatttcattttcatttcacaacaaaaagtttctggcttgctctcaagttgcattgacattgatagact |
7774776 |
T |
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| Q |
111 |
ttcgtcattaactcgcagcgattcgcgtcattcaatggcttaccagaaaacactaaaggaattattgttcttgaaagatcaaacatattactaccaacgc |
210 |
Q |
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| T |
7774775 |
tccatcattcactggagaggattcac--cactcaacggcttaccaaaaatcactaaaggaattattggtctttcaagatcaaacctttcactaccaacac |
7774678 |
T |
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| Q |
211 |
aacttgcattgaaaaacaagcttccacctaaattcctctctttgtttgccttcttcaaacaaacaaggattcactaaattacttgttggat |
301 |
Q |
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| T |
7774677 |
aacttgcattgaaaaacaagcttccacacaaatt-ctctctttgtttaccttcttcaaacaaacaaggattcactaacttgcttgttggat |
7774588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 142 - 301
Target Start/End: Complemental strand, 7767419 - 7767261
Alignment:
| Q |
142 |
tcaatggcttaccagaaaacactaaaggaattattgttcttgaaagatcaaacatattactaccaacgcaacttgcattgaaaaacaagcttccacctaa |
241 |
Q |
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| T |
7767419 |
tcaatggcttaccaaaaaacactaaaggaatttttggtcttgcaagatcaaacctttcactaccaactcaacttgcattgaaaaacaagcttcaaccaaa |
7767320 |
T |
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| Q |
242 |
attcctctctttgtttgccttcttcaaacaaacaaggattcactaaattacttgttggat |
301 |
Q |
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| T |
7767319 |
att-ctctctttgtttgccttcttcaaacaaacaaggattcactaacttgcttgttggat |
7767261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 7767546 - 7767479
Alignment:
| Q |
17 |
aaattcctttttggtgttaaccttgatgaagatttaattttcatttcacaacaaaaagtttctggctt |
84 |
Q |
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| T |
7767546 |
aaattcatttttggtggtggccttggtgaagatttcattttcatttctcaacaaaaagtttctggctt |
7767479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 301
Target Start/End: Original strand, 11342 - 11496
Alignment:
| Q |
142 |
tcaatggcttaccagaaaacactaaaggaattattgttcttgaaagatcaaacatatt-actaccaacgcaacttgcattgaaaaacaagcttccaccta |
240 |
Q |
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| T |
11342 |
tcaatggcttacctaaaaataccaaaggaattattggtcttgcaagatcaaa-atattcactaca----caacttgccttgagaaacaagcttccaccta |
11436 |
T |
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| Q |
241 |
aattcctctctttgtttgccttcttcaaacaaacaaggattcactaaattacttgttggat |
301 |
Q |
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| T |
11437 |
aattc-tctctttgtttaccttcctcaaacaaacaaggattcacaaacttgcttgttggat |
11496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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