View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4434_low_9 (Length: 244)
Name: NF4434_low_9
Description: NF4434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4434_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 14260412 - 14260187
Alignment:
| Q |
19 |
acagtggccattatgatagacattgattcctgcaaattctcaaattagataaagaaatatacaacataaatttgtaaattcaacaattgattgagaatat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14260412 |
acagtggccattatgatagacattgattcctgcaaattctcaaattagataaagaaatatacaacataaatttacaaattcaacaattgattgagaatat |
14260313 |
T |
|
| Q |
119 |
tacagttggacagattctaagtgcagatagagtggttactcctattgagtacatccattgatctatattatgaaaccaagtttcttccggactttcatat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14260312 |
tacagttggacagattctaagtgcagatagagtggttactcctattgagtacatccattgatctatattatgaaaccaagtttcttccggactctcatat |
14260213 |
T |
|
| Q |
219 |
atacccttgttcggtgaaaatgtttt |
244 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
14260212 |
atacccttgtacggtgaaaatgtttt |
14260187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 22136114 - 22136279
Alignment:
| Q |
19 |
acagtggccattatgatagacattgattcctgcaaattctcaaattagataaagaaatatacaacataaatttgtaaattcaacaattgattgagaatat |
118 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||||||||||||| |||||| |||||||| || ||||||||||| |||||| || ||||| ||||||| || |
|
|
| T |
22136114 |
acagtgaccattatgatagccatcgattcctgcaaattctcacattaga-aaagaaatgtataacataaatttataaattaaataattggttgagaaaat |
22136212 |
T |
|
| Q |
119 |
tacagttggacagattctaagtgcagatagagtggttactcctattgagtacatccattgatctata |
185 |
Q |
| |
|
||| | ||||||||||||||||| ||| |||||||||| || ||||||||| | ||| ||||||| |
|
|
| T |
22136213 |
taccactagacagattctaagtgcaaatatagtggttactactgttgagtacacctattaatctata |
22136279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 7558952 - 7558905
Alignment:
| Q |
174 |
cattgatctatattatgaaaccaagtttcttccggactttcatatata |
221 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
7558952 |
cattgatctatattatgaaaccaattatcttcatgactttcatatata |
7558905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 22145724 - 22145783
Alignment:
| Q |
185 |
attatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgtttt |
244 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||| |
|
|
| T |
22145724 |
attatgaaaccaagtatcttcacgactttcatatatagccttgtaaagtgaaaatgtttt |
22145783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 8771764 - 8771809
Alignment:
| Q |
174 |
cattgatctatattatgaaaccaagtttcttccggactttcatata |
219 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
8771764 |
cattgatctatattatgaaaccaattatcttcatgactttcatata |
8771809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University