View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4435-Insertion-2 (Length: 906)
Name: NF4435-Insertion-2
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435-Insertion-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 641; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 235 - 906
Target Start/End: Original strand, 41667302 - 41667974
Alignment:
| Q |
235 |
aactcttttttcaggtgctttggatgattttcagaccctcaacctaaattcttcccttccaaggtccctctttcactcactatatattcattattttcat |
334 |
Q |
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| T |
41667302 |
aactcttttttcaggtgctttggatgattttcagaccctcaacctaaattcttcccttccaaggtccctctttcactcactatatattcattattttcat |
41667401 |
T |
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| Q |
335 |
ttcttctttaactcaatctcatacgttgtttgtttatttatttatcagaaccggtgaacaaactgggaacaaaaaggagacaccttctttaccctcaggg |
434 |
Q |
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| T |
41667402 |
ttcttctttaactcaatctcatacgttgtttgtttatttatttatcagaaccggtgaacaaactgggaacaaaaaggagtcaccttctttaccctcaggg |
41667501 |
T |
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| Q |
435 |
gttcaaggattgggattaggtttacctgatttgaaaagcaagaaaaaggggaaacagaaggtttccaaggatgctcatgtctccgaagctctcaacaagc |
534 |
Q |
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| T |
41667502 |
gttcaaggattgggattaggtttacctgatttgaaaagcaagaaaaaggggaaacagaaggtttccaaggatgctcatgtctccgaagctctcaacaagc |
41667601 |
T |
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| Q |
535 |
tcagggagcaaactaaagaggctgttaaaggccttgaattcattaatccacccggtgccggtgctggtgttgatgatttaggtaaagatgggatgatgga |
634 |
Q |
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| T |
41667602 |
tcagggagcaaactaaagaggctgttaaaggccttgaattcattaacccacccggtgccggtgctggtgttgatgatttaggtaaagatgggatgatgga |
41667701 |
T |
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| Q |
635 |
agattgggttaaacagtttgaagagcttgctggctctcaggtattaattctaattcgttatgatcttaatgtgctcgatatgtaatatgaatactctagg |
734 |
Q |
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| T |
41667702 |
agattgggttaaacagtttgaagagcttgctggctctcaggtattaattctaattcgttatgatcttaatgtgctcgatatgtaatttgaatactctagg |
41667801 |
T |
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| Q |
735 |
atatagaaatatattgcttttatgc-ttttgcctgttattgtttagtttaaaagaaaaattagatggctttagaaatttatatcagcgatttgctgcatt |
833 |
Q |
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| T |
41667802 |
atatagaaatatattgctttcatgctttttgcctgttattgtttagtttaaaagaaaaattagatggctttagaaatctatatcagcgatttgctgcatt |
41667901 |
T |
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| Q |
834 |
cggtataatcatagttaatgtgctttggaatttgcataaaagaaatatgtaagtggtgtcccggtatactata |
906 |
Q |
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| T |
41667902 |
tggtataatcatagttaatgtgctttggaatttgcataaaagaaatatgtaagtggtgtcccggtatactata |
41667974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 41667049 - 41667227
Alignment:
| Q |
11 |
gaatggtgataattggaagtggatgaaaagagaattgtatctatcggaactggaggcagcattggttgttgtagtttttgacgattacaacaactagtag |
110 |
Q |
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| T |
41667049 |
gaatggtgataattggaagtggatgaaaagagaattgtatctatcgg-----gaggcagcattggttgttgtagtttttgacgattacaacaactagtag |
41667143 |
T |
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| Q |
111 |
tttggcggtgacagacagacaagacaaccatgaccgaccactccgacgacctcgaccaacttctcgacagtaatacacgctcac |
194 |
Q |
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| T |
41667144 |
tttggcggtgacagacagacaagacaaccatgaccgaccactccgacgacctcgaccaacttctcgacagtaatacacgctcac |
41667227 |
T |
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