View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4435-Insertion-4 (Length: 623)
Name: NF4435-Insertion-4
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435-Insertion-4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 11 - 623
Target Start/End: Original strand, 35607054 - 35607664
Alignment:
| Q |
11 |
accacgatgcaaatcaatgtttttaccggtgtttcaccccatttcagtagaggaacatacattggttacaaaatgtgggtgttgctctatgttggcggca |
110 |
Q |
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| T |
35607054 |
accacgatgcaaatcaatgtttttaccggtgcttcaccccatttcagtagaggaatatacattggttacaaaatgtgggtgttgctctatgttggcggca |
35607153 |
T |
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| Q |
111 |
ctgagctcggtgacaaaaataccgaggccaagtacttgcccgtttaagttgaaatggtcccaacccaacagccaccacccttcacattgttgaatcagta |
210 |
Q |
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| T |
35607154 |
ctgagctcggtgacaaaaatactgaggccaagtactcgcccgtttaagttgaaatggtcccaacccaacagccaccacccttcacattgttgaatcagta |
35607253 |
T |
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| Q |
211 |
atatatacatatgcatgccccaacaacaatcatactagaaagtgagattaaaaatcctgttacttctgtcaaggaattgctgtagcatttctaggatatc |
310 |
Q |
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| T |
35607254 |
atatatacatatgcatgccccagcaacaatcatactagcaagtgagattaaaaatcctgttacttctgtcaaggaattgctgtagcatttctacgatatc |
35607353 |
T |
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| Q |
311 |
taccagaagatgcaaatccttgaagaattcgtgaatgttcttgcttcaaacgtttatacgagaatccctgaaatggcctgattcacataacaaaaatagc |
410 |
Q |
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| T |
35607354 |
taccagaagatgcgaatccttgaagaattcgtgaatgttcttgcttcaaacgtttatacgagaatccctgaaatggcctgattcacataacaaaaatagc |
35607453 |
T |
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| Q |
411 |
gagttaatgaccaacggtgaagaaaaatagttaccatgtatcatgtatgagaataaacaacttcnnnnnnnnnnnttaattaagaaaatcaatgtcagat |
510 |
Q |
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| T |
35607454 |
gagttaatgaccaacggtgaagaaaaatagttaccatgtatcatgtatgagaataaacaacttcaaaaaaaataa--aattaagaaaatcaatgtcagat |
35607551 |
T |
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| Q |
511 |
gccaattctatctgtagtggcttggcaaaccatggccagtctagtttttgaaaatagagctaccttctagattcaaatagatgcaaactaccacatgcca |
610 |
Q |
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| T |
35607552 |
gccaattctatctgtagtggcttggcaaaccatggccagtctagtttttgaaaatggagctaccttctagattcaaatagatgcaaactaccacgtgcca |
35607651 |
T |
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| Q |
611 |
gattagagagcac |
623 |
Q |
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| T |
35607652 |
gattagagagcac |
35607664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 277 - 447
Target Start/End: Original strand, 35617215 - 35617385
Alignment:
| Q |
277 |
tgtcaaggaattgctgtagcatttctaggatatctaccagaagatgcaaatccttgaagaattcgtgaatgttcttgcttcaaacgtttatacgagaatc |
376 |
Q |
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| T |
35617215 |
tgtcacgggattgctggagcattcctaggatatctaccagaagatgcgaatcgctgcagagttcgtggatgttcttgcttcaaacgtttattcgagaatc |
35617314 |
T |
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| Q |
377 |
cctgaaatggcctgattcacataacaaaaatagcgagttaatgaccaacggtgaagaaaaatagttaccat |
447 |
Q |
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| T |
35617315 |
cctgaaatggcctgattcacataacaaaaatagcaagttaatgaccaatgatgaagaaaaatagttaccat |
35617385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 154 - 309
Target Start/End: Original strand, 35617059 - 35617214
Alignment:
| Q |
154 |
ttaagttgaaatggtcccaacccaacagccaccacccttcacattgttgaatcagtaatatatacatatgcatgccccaacaacaatcatactagaaagt |
253 |
Q |
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| T |
35617059 |
ttaagttgaaatggtctcaacccaacagccaccacccttcacattgctgaatcagtaacatatacacatgcatgccccaacaacagtcataccagtaagt |
35617158 |
T |
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| Q |
254 |
gagattaaaaatcctgttacttctgtcaaggaattgctgtagcatttctaggatat |
309 |
Q |
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| T |
35617159 |
gagactgaaaatcctgtttctcttgtcacgggattgctggagcattcctaggatat |
35617214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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