View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4435-Insertion-5 (Length: 370)
Name: NF4435-Insertion-5
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 3280051 - 3279742
Alignment:
| Q |
7 |
agaaagtgcatactattattaggtgggaagtttgaatgaaaaggaattgaagatgaagagatgttgttgcagttgcagttg------tagtatcggagac |
100 |
Q |
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| T |
3280051 |
agaaagtgcatactattattaggtgggaagtttgaatgaaaaggaattgaagatgaagagatgttgttgcagttgcagttgcagttgtagtatcggagac |
3279952 |
T |
|
| Q |
101 |
ggaaaagtgatgattgggaaagtggcttattcatcatcaacactctggttgatgatgaatnnnnnnnnnnnnnnnnnnnnnnnattgagttcatgttttt |
200 |
Q |
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| T |
3279951 |
tgaaaagtgatgattgggaaagtggcttattcatca------ctttggttgatgatgaataagaagaagaagaagaagaagaaattgagttcatgttttt |
3279858 |
T |
|
| Q |
201 |
tatttcaacaaacattctcttctctccagaaatcaaacccaaccggcaccggacttccttttaaaactcctttttattatcctagtacagt--tagtacc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3279857 |
tatttcaacaaacattctcttctctccagaaatcaaacccaaacggcaccggacttccttttaaaactcctttttattatcctagtacagtagtagtacc |
3279758 |
T |
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| Q |
299 |
actgacacttcgtaca |
314 |
Q |
| |
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|||||||||||||||| |
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| T |
3279757 |
actgacacttcgtaca |
3279742 |
T |
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